Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000354.1 Kokia drynarioides strain JFW-HI SEQ_111138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:1013 original size:19 final size:18

Alignment explanation


    Indices: 991--1028  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 18

        981 AATATTATAG

                                
        991 AAATAATAAA-ATTTCTAAA
          1 AAATAA-AAAGATTT-TAAA

                              
       1010 AAATAAAAAGATTTTAAA
          1 AAATAAAAAGATTTTAAA

             
       1028 A
          1 A

       1029 TTTTTTTTAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    8  0.44
  19   10  0.56

ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29


Consensus pattern (18 bp):   
AAATAAAAAGATTTTAAA
Done.