Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003541.1 Kokia drynarioides strain JFW-HI SEQ_116387, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35


Found at i:173 original size:44 final size:44

Alignment explanation


    Indices: 122--210  Score: 169
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        112 ATTGGATGTA

                           *                            
        122 TGATTATTTAATTATTGTATAGGGATCTTCAATGGATCAACTAT
          1 TGATTATTTAATTATCGTATAGGGATCTTCAATGGATCAACTAT

                                                        
        166 TGATTATTTAATTATCGTATAGGGATCTTCAATGGATCAACTAT
          1 TGATTATTTAATTATCGTATAGGGATCTTCAATGGATCAACTAT

             
        210 T
          1 T

        211 TGGAAAAGGA


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   44  1.00

ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43


Consensus pattern (44 bp):   
TGATTATTTAATTATCGTATAGGGATCTTCAATGGATCAACTAT
Done.