Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003544.1 Kokia drynarioides strain JFW-HI SEQ_116392, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38


Found at i:826 original size:22 final size:23

Alignment explanation


    Indices: 780--826  Score: 60
    Period size: 22  Copynumber: 2.1  Consensus size: 23

        770 TTTTTGTATA

                               **  
        780 TTTATTTTTAGAAATTTAATTAT
          1 TTTATTTTTAGAAATTTAAAGAT

                     *             
        803 TTTATTTTTCG-AATTTAAAGAT
          1 TTTATTTTTAGAAATTTAAAGAT

              
        825 TT
          1 TT

        827 AGATTCAATT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  22   11  0.52
  23   10  0.48

ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60


Consensus pattern (23 bp):   
TTTATTTTTAGAAATTTAAAGAT
Done.