Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003553.1 Kokia drynarioides strain JFW-HI SEQ_116412, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2856
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35


Found at i:304 original size:27 final size:27

Alignment explanation


    Indices: 273--332  Score: 93
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        263 GTTCAGGCAT

                                  *    
        273 CAAATTGAATAAAAAAAAATTAGGTAC
          1 CAAATTGAATAAAAAAAAATTAAGTAC

                             **        
        300 CAAATTGAATAAAAAAAGTTTAAGTAC
          1 CAAATTGAATAAAAAAAAATTAAGTAC

                  
        327 CAAATT
          1 CAAATT

        333 AAAAAAGTGT


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  27   30  1.00

ACGTcount: A:0.57, C:0.08, G:0.10, T:0.25


Consensus pattern (27 bp):   
CAAATTGAATAAAAAAAAATTAAGTAC
Done.