Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003566.1 Kokia drynarioides strain JFW-HI SEQ_116430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2097
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.36


Found at i:1647 original size:11 final size:11

Alignment explanation


    Indices: 1617--1649  Score: 50
    Period size: 11  Copynumber: 3.1  Consensus size: 11

       1607 GCTCTTCTAC

                    *  
       1617 TTCTCTTTGCT
          1 TTCTCTTTCCT

                       
       1628 TTC-CTTTCCT
          1 TTCTCTTTCCT

                       
       1638 TTCTCTTTCCT
          1 TTCTCTTTCCT

             
       1649 T
          1 T

       1650 CTCCAGACGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  10    9  0.45
  11   11  0.55

ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64


Consensus pattern (11 bp):   
TTCTCTTTCCT
Done.