genome.fa.s3569.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003569.1 Kokia drynarioides strain JFW-HI SEQ_116435, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172734

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735--835	26	3.9	26	78	0	103	31	24	17	25	1.97
19473--19513	10	3.9	10	84	12	55	0	26	0	73	0.84
20112--20145	18	1.9	17	88	5	50	58	2	17	20	1.51
23852--24026	89	2.0	89	98	0	341	28	17	15	38	1.90
30048--30090	17	2.5	18	81	11	54	2	23	0	74	0.93
30044--30089	10	4.3	10	81	13	56	2	23	0	73	0.94
30829--30874	21	2.2	20	84	3	56	4	32	6	56	1.45
30837--30883	21	2.2	21	84	0	58	6	31	6	55	1.51
41572--41612	18	2.3	18	91	4	66	53	14	17	14	1.73
51214--51282	26	2.7	26	97	0	129	30	30	20	18	1.97
55559--55588	5	6.0	5	92	0	51	83	0	16	0	0.65
55560--55591	15	2.1	15	100	0	64	87	0	12	0	0.54
64743--64846	55	1.9	55	89	0	163	22	17	18	42	1.89
69603--69685	20	4.1	19	76	11	76	26	20	22	30	1.98
71285--71316	2	17.0	2	87	12	50	50	0	0	50	1.00
71855--72013	71	2.2	71	84	2	203	33	13	23	28	1.93
72138--72176	21	1.9	20	89	5	60	30	15	23	30	1.95
79068--79299	60	3.9	60	76	9	204	14	28	18	37	1.90
79068--79292	40	5.7	39	73	8	141	14	29	18	37	1.90
79068--79302	20	11.8	20	70	6	109	14	29	19	37	1.90
83541--83593	23	2.3	24	78	15	58	60	0	1	37	1.08
84021--84068	24	1.9	25	84	16	64	64	10	2	22	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86071--86095	2	12.5	2	100	0	50	48	0	0	52	1.00
87039--87251	20	10.6	20	78	2	185	13	28	22	36	1.91
87122--87268	60	2.5	60	82	2	170	13	31	19	36	1.90
90237--90303	10	6.3	10	77	16	55	47	10	2	38	1.53
90237--90311	20	3.8	19	80	7	78	48	10	2	38	1.52
90276--90309	12	2.8	12	86	0	50	47	11	0	41	1.40
90300--90450	68	2.2	66	89	5	223	30	11	3	54	1.51
95060--95099	18	2.3	16	84	16	53	60	0	22	17	1.37
95887--95936	24	2.2	22	86	10	66	40	18	24	18	1.91
95896--96083	24	7.8	24	71	3	101	36	13	26	23	1.92
95943--96082	72	1.9	72	79	2	156	37	11	25	25	1.90
95896--96080	48	3.9	48	84	0	217	37	13	25	23	1.92
96545--96703	71	2.2	71	85	2	203	30	13	25	29	1.94
116342--116366	13	1.9	13	100	0	50	24	16	12	48	1.79
131545--131583	21	1.9	21	89	5	62	66	7	12	12	1.43
146994--147039	17	2.7	17	93	0	74	60	21	10	6	1.52
147977--148018	21	2.0	21	95	0	75	59	16	4	19	1.54
150312--150511	15	13.1	14	67	21	84	68	4	6	21	1.29
150320--150546	17	13.5	16	64	18	70	68	4	5	21	1.28
150390--150520	4	32.0	4	68	21	67	69	4	3	22	1.23
150307--150511	75	2.7	74	79	13	213	68	3	6	20	1.29
150391--150511	11	11.9	10	67	23	58	70	4	4	21	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150391--150542	79	1.9	78	81	11	184	69	5	3	21	1.23
150613--150686	30	2.5	29	79	14	80	64	6	6	21	1.41
151959--152009	12	4.2	12	76	18	52	3	0	15	80	0.86
151942--152009	22	2.9	23	82	10	93	5	0	16	77	0.95
152254--152380	50	2.5	50	80	1	146	27	15	20	36	1.93
152396--152696	101	3.0	101	83	0	361	27	18	17	35	1.94
152490--152785	151	2.0	151	81	5	357	27	18	17	36	1.94
152640--152750	50	2.2	51	83	4	145	23	16	19	40	1.91
154151--154449	52	5.8	52	87	3	397	34	23	15	27	1.94
154155--154449	156	1.9	156	88	4	443	34	22	15	27	1.95
159296--159437	70	2.0	72	87	4	207	39	4	19	35	1.74
160976--161007	17	1.9	17	93	6	57	12	34	0	53	1.39
161924--161962	13	2.8	13	88	7	51	38	2	10	48	1.51
163186--163244	26	2.2	27	93	3	102	20	27	18	33	1.96

Tables:   1

The End!