Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003571.1 Kokia drynarioides strain JFW-HI SEQ_116439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4468
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36


Found at i:114 original size:2 final size:2

Alignment explanation


    Indices: 107--133  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

         97 GGATGTTACA

                                                    
        107 GT GT GT GT GT GT GT GT GT GT GT GT GT G
          1 GT GT GT GT GT GT GT GT GT GT GT GT GT G

        134 AATTGATTAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48


Consensus pattern (2 bp):   
GT

Found at i:1198 original size:2 final size:2

Alignment explanation


    Indices: 1191--1228  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       1181 ACAATAAATA

                                                                    
       1191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1229 GTGTGTGTGT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1754 original size:22 final size:22

Alignment explanation


    Indices: 1729--1771  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1719 TTAAAATGTA

                     *            
       1729 TTTTAATTTTAATTTAATTTAT
          1 TTTTAATTTGAATTTAATTTAT

                *          *     
       1751 TTTTTATTTGAATTTGATTTA
          1 TTTTAATTTGAATTTAATTTA

       1772 GACCCGAACA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67


Consensus pattern (22 bp):   
TTTTAATTTGAATTTAATTTAT
Done.