Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003572.1 Kokia drynarioides strain JFW-HI SEQ_116441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9265
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:3078 original size:24 final size:23

Alignment explanation


    Indices: 3051--3124  Score: 78
    Period size: 24  Copynumber: 3.0  Consensus size: 23

       3041 TGACTTATAT

                                    
       3051 TATATTATTTTTAAATATTTAAAA
          1 TATATT-TTTTTAAATATTTAAAA

                               *      
       3075 TATATTTATTTTATAATATATAATAA
          1 TATATTT-TTTTA-AATATTTAA-AA

                          *         
       3101 -ATATTTTTTTTAATTATTTAAAA
          1 TATA-TTTTTTTAAATATTTAAAA

             
       3124 T
          1 T

       3125 TTGAGTCGAT


Statistics
Matches: 42,  Mismatches: 3, Indels: 10
        0.76            0.05        0.18

Matches are distributed among these distances:
  23    3  0.07
  24   18  0.43
  25   16  0.38
  26    5  0.12

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (23 bp):   
TATATTTTTTTAAATATTTAAAA

Found at i:3085 original size:25 final size:25

Alignment explanation


    Indices: 3051--3124  Score: 84
    Period size: 25  Copynumber: 3.0  Consensus size: 25

       3041 TGACTTATAT

                                     
       3051 TATA-TTATTTTTAAATATTTAAAA
          1 TATATTTATTTTTAAATATTTAAAA

                                *      
       3075 TATATTTA-TTTTATAATATATAATAA
          1 TATATTTATTTTTA-AATATTTAA-AA

                           *         
       3101 -ATATTT-TTTTTAATTATTTAAAA
          1 TATATTTATTTTTAAATATTTAAAA

             
       3124 T
          1 T

       3125 TTGAGTCGAT


Statistics
Matches: 42,  Mismatches: 3, Indels: 10
        0.76            0.05        0.18

Matches are distributed among these distances:
  23    2  0.05
  24   16  0.38
  25   22  0.52
  26    2  0.05

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (25 bp):   
TATATTTATTTTTAAATATTTAAAA

Done.