Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003590.1 Kokia drynarioides strain JFW-HI SEQ_116464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5254
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35


Found at i:2903 original size:15 final size:16

Alignment explanation


    Indices: 2876--2921  Score: 58
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       2866 CCGTTCAAAT

                             
       2876 ATTAATGTAAAATAAC-
          1 ATTAAT-TAAAATAACA

                *           
       2892 ATTATTTAAAATAACA
          1 ATTAATTAAAATAACA

                     *    
       2908 ATTAATTAATATAA
          1 ATTAATTAAAATAA

       2922 TTAATTCTAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  15    9  0.35
  16   17  0.65

ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37


Consensus pattern (16 bp):   
ATTAATTAAAATAACA

Done.