Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003592.1 Kokia drynarioides strain JFW-HI SEQ_116466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1846
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35


Found at i:987 original size:20 final size:20

Alignment explanation


    Indices: 947--988  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        937 ACATCAATGG

                            *   
        947 CTATTAACTGACATTAGTAA
          1 CTATTAACTGACATTACTAA

                                 
        967 CTATTAACTGAC-TTAACTAA
          1 CTATTAACTGACATT-ACTAA

              
        987 CT
          1 CT

        989 GAACATCTGT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  19    2  0.10
  20   18  0.90

ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36


Consensus pattern (20 bp):   
CTATTAACTGACATTACTAA
Done.