genome.fa.s3596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003596.1 Kokia drynarioides strain JFW-HI SEQ_116477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201571

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9153--9188	17	2.1	17	89	0	54	69	8	0	22	1.15
21666--21733	33	2.1	33	86	5	93	33	8	30	26	1.87
33225--33368	50	2.9	49	79	9	148	45	2	2	49	1.28
33271--33309	14	2.9	14	84	3	53	41	2	0	56	1.13
33225--33416	49	3.9	51	73	15	161	47	3	2	46	1.32
35027--35249	70	3.2	68	82	6	245	32	22	21	22	1.98
38449--38503	20	2.7	20	74	2	56	7	1	14	76	1.08
38452--38503	21	2.5	20	82	17	63	7	1	13	76	1.07
43817--44453	319	2.0	318	94	0	1112	30	16	20	32	1.94
49104--49201	30	3.3	30	84	5	101	38	2	20	38	1.64
49125--49212	30	2.9	30	88	3	124	39	2	20	37	1.65
58552--58600	18	2.8	18	87	9	66	55	4	10	30	1.52
63834--63886	24	2.2	24	90	3	81	45	1	7	45	1.42
63846--63898	24	2.2	24	93	6	90	33	5	5	54	1.47
63843--63891	24	2.0	24	100	0	98	38	4	8	48	1.52
63909--64160	52	5.0	51	70	13	148	48	10	3	37	1.55
63867--64266	148	2.7	148	88	3	574	45	9	4	41	1.57
64605--64822	51	4.3	51	64	14	126	43	10	4	42	1.58
64635--64878	51	4.8	50	69	14	151	42	10	3	43	1.55
64556--65095	148	3.6	148	85	5	712	43	11	3	41	1.58
65531--65560	3	10.0	3	100	0	60	33	0	33	33	1.58
65383--65735	175	2.0	175	96	1	645	31	6	17	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65695--65719	3	8.3	3	100	0	50	64	0	0	36	0.94
65718--65755	3	12.7	3	94	0	67	36	0	28	34	1.58
66124--66241	42	2.8	42	88	3	159	33	25	17	23	1.97
66220--66263	22	2.0	22	100	0	88	27	36	22	13	1.92
66154--66347	105	1.8	106	88	3	302	34	26	19	19	1.96
66242--66897	42	15.6	42	87	1	821	35	23	18	22	1.95
66186--66305	64	1.9	63	92	1	204	32	28	20	18	1.96
67316--67398	14	6.3	12	74	16	60	8	7	2	81	0.94
67298--67400	32	3.2	31	78	16	111	7	11	1	78	1.03
75351--75420	4	17.5	4	82	5	88	48	4	27	20	1.68
77929--77969	17	2.4	17	100	0	82	36	24	12	26	1.91
79709--79758	24	2.1	23	85	3	64	38	4	4	54	1.38
79756--80102	143	2.4	148	86	6	485	45	9	3	42	1.52
80831--80864	13	2.5	13	90	4	50	44	8	0	47	1.34
81171--81291	59	2.1	59	98	0	233	49	10	12	27	1.73
111395--111447	26	2.0	27	85	3	72	67	7	0	24	1.16
111579--111625	12	3.9	12	85	0	58	72	19	2	6	1.17
113242--113276	18	2.0	17	94	5	61	42	0	0	57	0.99
119082--119293	52	4.0	53	77	4	216	40	25	15	18	1.90
119237--119321	43	2.0	44	88	6	129	36	27	18	17	1.94
120331--120402	29	2.5	29	88	0	99	34	37	18	9	1.83
122876--122934	31	1.9	31	96	0	109	50	18	13	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124931--125377	195	2.3	194	84	4	553	27	19	27	25	1.99
125548--125583	18	1.9	19	88	5	56	13	0	27	58	1.36
126872--126911	20	2.1	19	85	4	53	40	5	7	47	1.54
127485--127604	60	2.0	60	96	0	222	33	13	10	43	1.77
133754--134026	90	3.0	88	85	8	338	38	19	9	32	1.84
134132--134238	10	11.4	9	68	16	58	67	0	0	30	1.03
134154--134239	30	2.9	29	79	5	100	65	0	1	33	1.01
134329--134567	91	2.6	91	87	1	320	38	11	16	33	1.84
136816--137099	104	2.7	102	82	3	318	21	12	26	39	1.89
136810--137104	26	11.3	26	76	5	220	21	12	27	39	1.89
141348--141480	63	2.1	63	88	4	182	54	6	3	36	1.43
141565--141623	13	4.3	13	74	23	50	0	16	10	72	1.10
142351--142744	43	9.1	42	78	8	339	28	18	21	31	1.96
142353--142739	84	4.5	86	82	7	430	28	18	21	31	1.97
142944--143076	50	2.7	49	77	13	146	15	30	16	36	1.90
144016--144047	14	2.2	15	94	5	57	9	0	6	84	0.78
148549--148574	2	13.0	2	100	0	52	50	0	0	50	1.00
149842--149899	15	4.2	14	76	12	50	0	15	10	74	1.08
153403--153589	52	3.6	52	84	0	221	25	15	23	35	1.94
166210--166264	27	2.0	27	100	0	110	49	21	14	14	1.79
167959--168092	48	2.7	50	85	6	175	29	14	18	37	1.91
168611--168650	21	1.9	21	89	0	62	30	22	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173549--173695	61	2.4	62	82	5	174	31	13	23	30	1.93
180425--180599	61	2.8	62	83	5	210	32	12	22	33	1.91
180425--180601	62	2.8	61	84	5	203	31	12	22	33	1.91
182784--182837	20	2.8	19	86	13	76	64	0	1	33	1.04
182812--182872	32	1.9	32	83	6	79	60	0	4	34	1.18
186684--186717	16	2.1	16	88	5	50	5	23	5	64	1.38
186752--186790	17	2.2	18	86	4	53	69	5	5	20	1.28
187150--187207	19	3.2	17	80	20	64	32	0	1	65	1.03
187150--187195	10	5.1	9	78	17	51	32	0	0	67	0.91
187155--187212	29	2.1	26	84	15	73	27	0	1	70	0.97
187918--187960	19	2.3	19	95	0	77	39	9	6	44	1.64
196049--196169	24	5.0	24	92	0	188	15	18	24	41	1.89

Tables:   1

The End!