genome.fa.s3599.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003599.1 Kokia drynarioides strain JFW-HI SEQ_116484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203871

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--45	2	22.5	2	100	0	90	48	0	0	51	1.00
513--554	17	2.5	17	96	0	75	59	2	0	38	1.10
1054--1611	39	14.3	39	72	8	258	26	19	29	24	1.99
1054--1611	78	7.1	78	76	5	444	26	19	29	24	1.99
1054--1611	235	2.4	233	80	3	602	26	19	29	24	1.99
1054--1612	157	3.6	157	81	3	552	26	20	29	23	1.99
1511--1615	40	2.7	40	85	4	124	23	21	33	20	1.97
3906--3952	3	16.0	3	93	4	60	6	34	0	59	1.23
12187--12211	13	1.9	13	100	0	50	56	24	8	12	1.62
13389--13461	30	2.5	29	82	10	78	32	4	24	38	1.75
13467--13818	30	11.8	29	81	7	291	36	1	24	36	1.67
13477--13818	60	5.7	59	79	8	334	37	2	23	37	1.67
13477--13818	90	3.8	87	79	7	328	37	2	23	37	1.67
15221--15473	126	2.0	126	96	0	461	48	12	9	29	1.72
20163--20213	21	2.4	21	80	3	57	31	0	1	66	1.03
23276--23323	20	2.4	20	96	0	87	10	0	29	60	1.30
23366--23453	32	2.8	32	79	5	81	25	10	11	53	1.68
29325--29349	9	2.8	9	100	0	50	60	0	0	40	0.97
29771--29902	30	4.3	32	71	18	109	38	4	3	53	1.40
35184--35212	15	1.9	15	100	0	58	6	0	10	82	0.83
36447--36636	58	3.2	56	71	12	157	42	4	3	49	1.39
37342--37374	16	2.1	16	100	0	66	12	45	6	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37626--37775	28	5.4	28	83	0	165	23	24	18	34	1.96
42447--42489	18	2.3	18	80	11	52	23	9	6	60	1.51
46934--47060	28	4.5	29	82	7	111	32	16	24	26	1.96
46963--47098	56	2.3	59	83	5	170	33	18	24	23	1.97
46963--47098	28	4.7	29	80	10	122	33	18	24	23	1.97
48893--48935	13	3.0	15	80	13	63	53	0	2	44	1.13
55654--55687	11	2.9	12	82	8	52	38	2	8	50	1.49
56548--56623	37	2.1	36	85	11	102	42	0	2	55	1.14
56548--56623	11	6.8	11	71	21	52	42	0	2	55	1.14
58588--58730	50	2.9	49	80	10	164	30	13	20	34	1.92
59054--59115	29	2.1	29	85	11	83	19	6	16	58	1.59
66946--67025	23	3.4	24	76	15	85	45	23	20	11	1.83
66909--67009	23	4.3	23	75	14	82	43	23	19	12	1.86
77450--77555	25	4.1	24	79	11	88	31	1	4	62	1.27
77475--77595	25	4.2	27	76	18	95	32	3	1	62	1.21
81971--82008	15	2.4	16	95	4	69	44	7	15	31	1.75
87816--87848	12	2.8	12	90	0	57	15	6	3	75	1.11
99717--99758	12	3.1	14	80	16	52	78	2	16	2	0.96
101634--101664	16	1.9	16	93	0	53	48	6	25	19	1.72
101702--101765	26	2.5	26	92	0	110	64	12	6	17	1.47
106656--106687	16	2.0	16	100	0	64	25	6	31	37	1.81
108406--108432	3	9.0	3	100	0	54	33	0	66	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109507--110939	479	3.0	477	86	3	1987	33	11	19	35	1.87
112028--112073	24	2.0	23	86	4	65	26	36	15	21	1.93
112027--112073	12	4.0	12	75	2	51	25	36	17	21	1.94
112575--112620	20	2.3	20	88	7	67	17	6	21	54	1.65
114715--114883	46	3.7	46	83	1	203	28	13	20	37	1.90
114707--114908	93	2.2	93	86	3	273	27	12	21	38	1.89
115472--115509	16	2.2	18	90	9	62	50	5	5	39	1.48
118914--118944	16	1.9	16	93	0	53	38	6	12	41	1.69
119623--119686	26	2.4	26	74	7	67	68	3	7	20	1.28
120194--120234	19	2.3	17	91	8	64	43	4	2	48	1.37
120194--120234	18	2.3	17	87	8	55	43	4	2	48	1.37
120230--120574	50	7.1	50	65	21	142	44	10	2	42	1.52
120208--120728	152	3.5	146	84	8	616	45	9	2	42	1.51
120294--120520	51	4.6	50	66	20	136	43	8	1	46	1.44
120485--120534	24	2.1	24	82	17	61	36	8	2	54	1.42
121155--121212	3	19.3	3	85	0	80	60	1	5	32	1.29
121792--121887	48	2.0	48	95	0	174	47	10	25	16	1.78
123427--123476	23	2.1	24	82	10	59	48	18	8	26	1.75
124686--124757	28	2.6	27	80	8	81	33	13	16	36	1.89
128718--128767	21	2.4	21	86	0	64	32	28	14	26	1.94
140587--140888	150	2.0	150	98	0	577	33	15	18	32	1.93
151190--151268	28	2.7	29	72	18	74	30	1	3	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151643--151690	23	2.1	22	81	11	60	37	37	4	20	1.72
152204--152315	56	2.0	56	98	0	215	23	13	19	43	1.86
154916--154965	25	2.0	25	84	11	66	40	8	0	52	1.31
158852--158888	19	1.9	19	89	10	58	48	0	0	51	1.00
166155--166238	21	4.0	21	74	1	60	32	22	15	29	1.95
170705--170803	43	2.4	41	82	3	108	36	13	26	24	1.92
170786--170892	42	2.5	42	84	0	133	39	10	23	27	1.87
171565--171611	21	2.2	22	77	11	53	38	8	23	29	1.84
193333--193397	32	2.0	32	100	0	130	29	9	18	43	1.81

Tables:   1

The End!