Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003601.1 Kokia drynarioides strain JFW-HI SEQ_116486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1512
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36


Found at i:283 original size:7 final size:7

Alignment explanation


    Indices: 271--303  Score: 50
    Period size: 7  Copynumber: 4.7  Consensus size: 7

        261 ATTTTATAAG

                   
        271 GAATTTT
          1 GAATTTT

                   
        278 GAATTTT
          1 GAATTTT

                   
        285 GAATTTT
          1 GAATTTT

                    
        292 -AATTATT
          1 GAATT-TT

                 
        299 GAATT
          1 GAATT

        304 AAAGTTAGTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
   6    4  0.17
   7   16  0.67
   8    4  0.17

ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55


Consensus pattern (7 bp):   
GAATTTT

Done.