Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003602.1 Kokia drynarioides strain JFW-HI SEQ_116487, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 118110
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Warning! 174 characters in sequence are not A, C, G, or T
Found at i:4709 original size:3 final size:3
Alignment explanation
Indices: 4701--4727 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
4691 ACATTGCTAA
4701 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
4728 GAATAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:11359 original size:3 final size:3
Alignment explanation
Indices: 11351--11377 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
11341 TCCTTTGGCT
11351 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
11378 AGAGATTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:31635 original size:5 final size:5
Alignment explanation
Indices: 31625--31650 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
31615 CAGGCAAATC
31625 TCTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT T
31651 TTCTTCTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TCTTT
Found at i:37588 original size:28 final size:30
Alignment explanation
Indices: 37524--37579 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 30
37514 AATAGACAAT
*
37524 ATTTTTATAATTTTTAAAGGATTAAATCAA
1 ATTTTTATAATTTTTAAAGGATAAAATCAA
*
37554 ATTTTTAT-ATTTTTAAGGGATAAAAT
1 ATTTTTATAATTTTTAAAGGATAAAAT
37580 GTAATTTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (30 bp):
ATTTTTATAATTTTTAAAGGATAAAATCAA
Found at i:38077 original size:12 final size:13
Alignment explanation
Indices: 38059--38117 Score: 86
Period size: 12 Copynumber: 4.7 Consensus size: 13
38049 TTTTAGTTTG
38059 ATAAATAAATTAT
1 ATAAATAAATTAT
*
38072 -TAAATAATTTAT
1 ATAAATAAATTAT
38084 ATAAATAAATTAT
1 ATAAATAAATTAT
*
38097 -TAAATAATTTAT
1 ATAAATAAATTAT
38109 ATAAATAAA
1 ATAAATAAA
38118 AATATTTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
12 22 0.55
13 18 0.45
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATAAATAAATTAT
Found at i:38093 original size:25 final size:25
Alignment explanation
Indices: 38059--38117 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
38049 TTTTAGTTTG
38059 ATAAATAAATTATTAAATAATTTAT
1 ATAAATAAATTATTAAATAATTTAT
38084 ATAAATAAATTATTAAATAATTTAT
1 ATAAATAAATTATTAAATAATTTAT
38109 ATAAATAAA
1 ATAAATAAA
38118 AATATTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
ATAAATAAATTATTAAATAATTTAT
Found at i:39862 original size:23 final size:25
Alignment explanation
Indices: 39802--39860 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 25
39792 TTATTTTTGA
*
39802 TTTTTTTATAAAAATAATTTGAATTT
1 TTTTTTTATAAAAATAATCT-AATTT
39828 TTTATTAATTATAAAAATAATCT-ATTT
1 TTT-TT--TTATAAAAATAATCTAATTT
39855 TTTTTT
1 TTTTTT
39861 ATGTACGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
24 1 0.03
26 5 0.17
27 9 0.31
29 14 0.48
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (25 bp):
TTTTTTTATAAAAATAATCTAATTT
Found at i:41359 original size:24 final size:24
Alignment explanation
Indices: 41332--41391 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
41322 ATAAATTCTA
* *
41332 AAATTAAATATATTATTTAATAAT
1 AAATTAAATATAATAGTTAATAAT
41356 AAATTAAATATAATAGTTAATAAT
1 AAATTAAATATAATAGTTAATAAT
41380 AAATTTAAATAT
1 AAA-TTAAATAT
41392 GTTTAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
24 25 0.76
25 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
AAATTAAATATAATAGTTAATAAT
Found at i:46154 original size:14 final size:14
Alignment explanation
Indices: 46135--46169 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
46125 AAAAGTAAAG
*
46135 CATTTTCCAGAAAT
1 CATTTTCCAAAAAT
46149 CATTTTCCAAAAAT
1 CATTTTCCAAAAAT
46163 CATTTTC
1 CATTTTC
46170 AATGAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (14 bp):
CATTTTCCAAAAAT
Found at i:59710 original size:23 final size:23
Alignment explanation
Indices: 59684--59730 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
59674 GGCCTGAATC
59684 TGTGAGTATCTTGATCACTCCCT
1 TGTGAGTATCTTGATCACTCCCT
59707 TGTGAGTATCTTGATCACTCCCT
1 TGTGAGTATCTTGATCACTCCCT
59730 T
1 T
59731 TTTATAATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (23 bp):
TGTGAGTATCTTGATCACTCCCT
Found at i:64547 original size:23 final size:23
Alignment explanation
Indices: 64518--64567 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
64508 TCGGTGTAAA
64518 AAAATATTCATA-TTTATATTATT
1 AAAATATTCATACTTTATATTA-T
64541 AAAATATTCATACTTTATATTAT
1 AAAATATTCATACTTTATATTAT
64564 AAAA
1 AAAA
64568 CATTTTTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (23 bp):
AAAATATTCATACTTTATATTAT
Found at i:64669 original size:20 final size:20
Alignment explanation
Indices: 64639--64681 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
64629 ATATTTTCAA
64639 TAAAATATTAATAA-TATTATT
1 TAAAATATTAA-AATTATT-TT
64660 TAAAAT-TTAAAATTATTTT
1 TAAAATATTAAAATTATTTT
64679 TAA
1 TAA
64682 TCTGAATGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.33
20 8 0.38
21 6 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TAAAATATTAAAATTATTTT
Found at i:67020 original size:27 final size:29
Alignment explanation
Indices: 66966--67020 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
66956 TGAAAAGTAA
*
66966 AGAGATTAAATTCTTAAAAATAAAAATAC
1 AGAGATTAAATTCGTAAAAATAAAAATAC
*
66995 AGAGATTAAATT-GT-AAAATAATAATA
1 AGAGATTAAATTCGTAAAAATAAAAATA
67021 AATTATATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 11 0.46
28 1 0.04
29 12 0.50
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (29 bp):
AGAGATTAAATTCGTAAAAATAAAAATAC
Found at i:67281 original size:18 final size:20
Alignment explanation
Indices: 67246--67285 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
67236 TTGAAAAATA
67246 TAATAATTTATATTAATATTT
1 TAATAATTTATA-TAATATTT
67267 TAATAATTT-TA-AATATTT
1 TAATAATTTATATAATATTT
67285 T
1 T
67286 TTTAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
20 2 0.11
21 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TAATAATTTATATAATATTT
Found at i:70227 original size:9 final size:9
Alignment explanation
Indices: 70208--70243 Score: 63
Period size: 9 Copynumber: 3.9 Consensus size: 9
70198 ATGTAGGTGA
70208 CTTTTTCTTG
1 CTTTTT-TTG
70218 CTTTTTTTG
1 CTTTTTTTG
70227 CTTTTTTTG
1 CTTTTTTTG
70236 CTTTTTTT
1 CTTTTTTT
70244 CTGTACTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 20 0.77
10 6 0.23
ACGTcount: A:0.00, C:0.14, G:0.08, T:0.78
Consensus pattern (9 bp):
CTTTTTTTG
Found at i:70374 original size:13 final size:13
Alignment explanation
Indices: 70356--70381 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70346 TTATATATAA
70356 TAAAAATTAAACT
1 TAAAAATTAAACT
70369 TAAAAATTAAACT
1 TAAAAATTAAACT
70382 CAATAGGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAAAATTAAACT
Found at i:76123 original size:29 final size:30
Alignment explanation
Indices: 76081--76143 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
76071 TTGACCTTAT
* *
76081 TTAATTCCTTTTAATAGTACATGGACTAAA
1 TTAATTCCATTTAATAGTACAGGGACTAAA
* *
76111 TTAA-TCCATTTAATAGTAGAGGGACTAAT
1 TTAATTCCATTTAATAGTACAGGGACTAAA
76140 TTAA
1 TTAA
76144 CTTGATCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (30 bp):
TTAATTCCATTTAATAGTACAGGGACTAAA
Found at i:76957 original size:2 final size:2
Alignment explanation
Indices: 76952--76980 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
76942 CAAAAAAAAA
76952 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76981 AAAATTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77670 original size:39 final size:39
Alignment explanation
Indices: 77609--77702 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 39
77599 CGTGATCCAT
* * *
77609 TGATTTACGATCACGATCCTTAA-TTTTCTTACGATTCGC
1 TGATTTACGATCACGAACCTTAACTTTT-TAACGATCCGC
*
77648 TGATTTACGATCAC-AACACTTAACTTTTTAATGATCCGC
1 TGATTTACGATCACGAAC-CTTAACTTTTTAACGATCCGC
*
77687 TAATTTACGATCACGA
1 TGATTTACGATCACGA
77703 CTTTTTACTT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.04
39 40 0.85
40 5 0.11
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (39 bp):
TGATTTACGATCACGAACCTTAACTTTTTAACGATCCGC
Found at i:80751 original size:6 final size:6
Alignment explanation
Indices: 80740--80766 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
80730 CACCTCTCTC
80740 CTTCAT CTTCAT CTTCAT CTTCAT CTT
1 CTTCAT CTTCAT CTTCAT CTTCAT CTT
80767 ATTCCCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.00, T:0.52
Consensus pattern (6 bp):
CTTCAT
Found at i:82441 original size:14 final size:14
Alignment explanation
Indices: 82424--82455 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
82414 ATTATTTGCA
82424 TTTTTAATTTAATT
1 TTTTTAATTTAATT
*
82438 TTTTTATTTTAATT
1 TTTTTAATTTAATT
82452 TTTT
1 TTTT
82456 CCCTTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTAATTTAATT
Found at i:82452 original size:26 final size:26
Alignment explanation
Indices: 82398--82454 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
82388 CTTTAGACAT
* * *
82398 TTTTTATTTTAGTTTTATTATTTGCA
1 TTTTTAATTTAATTTTATTATTTGAA
* *
82424 TTTTTAATTTAATTTTTTTATTTTAA
1 TTTTTAATTTAATTTTATTATTTGAA
82450 TTTTT
1 TTTTT
82455 TCCCTTATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.74
Consensus pattern (26 bp):
TTTTTAATTTAATTTTATTATTTGAA
Found at i:85288 original size:9 final size:8
Alignment explanation
Indices: 85268--85297 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
85258 TTTTTAAAAT
85268 AAAAATTC
1 AAAAATTC
85276 AAAAATTC
1 AAAAATTC
*
85284 AAAAATTT
1 AAAAATTC
85292 AAAAAT
1 AAAAAT
85298 ATAGTACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (8 bp):
AAAAATTC
Found at i:85317 original size:6 final size:6
Alignment explanation
Indices: 85306--85350 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
85296 ATATAGTACA
85306 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
85351 TGCACTATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:86331 original size:22 final size:22
Alignment explanation
Indices: 86306--86350 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
86296 GAAAAGATTT
86306 AATTGAAAAAAAAAAAAGAAAA
1 AATTGAAAAAAAAAAAAGAAAA
* *
86328 AATTGAGAAAAGAAAAAGAAAA
1 AATTGAAAAAAAAAAAAGAAAA
86350 A
1 A
86351 GAAATGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (22 bp):
AATTGAAAAAAAAAAAAGAAAA
Found at i:99291 original size:21 final size:20
Alignment explanation
Indices: 99267--99305 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
99257 GATTATGTTG
*
99267 ATTATGTTAATTTGTACAAAA
1 ATTAT-TTAATTTATACAAAA
*
99288 ATTATTTGATTTATACAA
1 ATTATTTAATTTATACAA
99306 TTTTTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (20 bp):
ATTATTTAATTTATACAAAA
Found at i:105503 original size:196 final size:197
Alignment explanation
Indices: 105148--105534 Score: 580
Period size: 196 Copynumber: 2.0 Consensus size: 197
105138 TAGGACTATC
* *
105148 TGTATAAAAAGACATATTCTTGTGGTTGAGTTTGATTCACTTAAAACTTCTTTGTGCCCTAGGGA
1 TGTATAAAAAGA-ATATTCTTGTGGTTGAGTTTAATTCACTTAAAACTTCTTTGTGCCCAAGGGA
* * *
105213 TGGAGAGGGAGCACATACTAAATGCACCATGACGTAATTTCTTGGAAGGATATCTTATATTACTA
65 TGGAGAGAGAACACATACTAAATGCACCATGACATAATTTCTTGGAAGGATATCTTATATTACTA
*
105278 ATTATTATAGGTAAAGTTGTGTCGGATTGAAACCACTTGAAATGAAAATGGAATGTGCTTGTGCT
130 ATTATTATAGGTAAAGTTGCGTCGGATTGAAACCACTTGAAATGAAAATGGAATGTGCTTGTGCT
105343 TTT
195 TTT
* * * * *
105346 TGTATAAAAAG-ATATTCTTGTGGTTGTGTTTAATTCGCTTTAAGCTTAC-TTGTGCTCAAGGGA
1 TGTATAAAAAGAATATTCTTGTGGTTGAGTTTAATTCACTTAAAACTT-CTTTGTGCCCAAGGGA
* * * * *
105409 TGGAGAGATAACACATACTAAATGTACCTTGACATGATTTCTTGGAAGGATATCTTATATTATTA
65 TGGAGAGAGAACACATACTAAATGCACCATGACATAATTTCTTGGAAGGATATCTTATATTACTA
* *
105474 ATTATTATAGGTCAAGTTGCGTTGGATTGAAACCACTTGAAATGAAAATGGAATGTGCTTG
130 ATTATTATAGGTAAAGTTGCGTCGGATTGAAACCACTTGAAATGAAAATGGAATGTGCTTG
105535 AACTTTTTAA
Statistics
Matches: 170, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
196 158 0.93
197 1 0.01
198 11 0.06
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (197 bp):
TGTATAAAAAGAATATTCTTGTGGTTGAGTTTAATTCACTTAAAACTTCTTTGTGCCCAAGGGAT
GGAGAGAGAACACATACTAAATGCACCATGACATAATTTCTTGGAAGGATATCTTATATTACTAA
TTATTATAGGTAAAGTTGCGTCGGATTGAAACCACTTGAAATGAAAATGGAATGTGCTTGTGCTT
TT
Found at i:106565 original size:15 final size:15
Alignment explanation
Indices: 106545--106577 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
106535 GGCAAATGGC
106545 TCTCACAGTTCTAGT
1 TCTCACAGTTCTAGT
106560 TCTCACAGTTCTAGT
1 TCTCACAGTTCTAGT
106575 TCT
1 TCT
106578 AACCTTGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42
Consensus pattern (15 bp):
TCTCACAGTTCTAGT
Found at i:117301 original size:21 final size:22
Alignment explanation
Indices: 117265--117310 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
117255 AATATTCTCC
* *
117265 CTCTTTTTTCTATTCTCAATCT
1 CTCTTATTTCTATTCTCAACCT
*
117287 CTCTTATTT-TATTCTTAACCT
1 CTCTTATTTCTATTCTCAACCT
117308 CTC
1 CTC
117311 ATTCTTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.57
Consensus pattern (22 bp):
CTCTTATTTCTATTCTCAACCT
Done.