Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003609.1 Kokia drynarioides strain JFW-HI SEQ_116496, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37


Found at i:966 original size:20 final size:21

Alignment explanation


    Indices: 924--970  Score: 60
    Period size: 24  Copynumber: 2.1  Consensus size: 21

        914 CTCAACAAAT

                                    
        924 TAAAAATATTTATACTTTTTTAAA
          1 TAAAAATATTTATAC---TTTAAA

                                 
        948 TAAAAATATTTATAC-TTAAA
          1 TAAAAATATTTATACTTTAAA

               
        968 TAA
          1 TAA

        971 CACTAAGATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  20    8  0.35
  24   15  0.65

ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45


Consensus pattern (21 bp):   
TAAAAATATTTATACTTTAAA
Done.