Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003612.1 Kokia drynarioides strain JFW-HI SEQ_116499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8285
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:1530 original size:14 final size:13

Alignment explanation


    Indices: 1509--1550  Score: 59
    Period size: 13  Copynumber: 3.2  Consensus size: 13

       1499 GAAAATATAA

                         
       1509 TTTTTTCTTCTTT
          1 TTTTTTCTTCTTT

                          
       1522 TTCTTTTC-TCTTT
          1 TT-TTTTCTTCTTT

                  *      
       1535 TTTTTTTTTCTTT
          1 TTTTTTCTTCTTT

               
       1548 TTT
          1 TTT

       1551 CAAGTGAGTA


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  12    4  0.15
  13   17  0.65
  14    5  0.19

ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86


Consensus pattern (13 bp):   
TTTTTTCTTCTTT

Done.