Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003615.1 Kokia drynarioides strain JFW-HI SEQ_116505, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4412
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:1104 original size:7 final size:7

Alignment explanation


    Indices: 1092--1121  Score: 60
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       1082 ATCATCAACC

                   
       1092 TGATATA
          1 TGATATA

                   
       1099 TGATATA
          1 TGATATA

                   
       1106 TGATATA
          1 TGATATA

                   
       1113 TGATATA
          1 TGATATA

              
       1120 TG
          1 TG

       1122 GTCTTGTTTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43


Consensus pattern (7 bp):   
TGATATA

Done.