Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003627.1 Kokia drynarioides strain JFW-HI SEQ_116520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13650
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30


Found at i:5973 original size:16 final size:17

Alignment explanation


    Indices: 5952--5986  Score: 63
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       5942 TTTAATAATT

                             
       5952 ATATTTATTTTTA-TAA
          1 ATATTTATTTTTACTAA

                             
       5968 ATATTTATTTTTACTAA
          1 ATATTTATTTTTACTAA

              
       5985 AT
          1 AT

       5987 GGTACAGATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  16   13  0.72
  17    5  0.28

ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60


Consensus pattern (17 bp):   
ATATTTATTTTTACTAA

Done.