Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003632.1 Kokia drynarioides strain JFW-HI SEQ_116530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1295
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34


Found at i:1168 original size:30 final size:32

Alignment explanation


    Indices: 1114--1184  Score: 85
    Period size: 30  Copynumber: 2.3  Consensus size: 32

       1104 TAGTAGTGAT

                     *                      
       1114 AAAATTATATTTTAATTATTTTAAAAATAATA
          1 AAAATTATAATTTAATTATTTTAAAAATAATA

                             *        * *   
       1146 AAAATT-TAATTTAA-TCTTTTAAAATTTATA
          1 AAAATTATAATTTAATTATTTTAAAAATAATA

                      
       1176 AAAA-TATAA
          1 AAAATTATAA

       1185 ATTATTAAAA


Statistics
Matches: 34,  Mismatches: 4, Indels: 4
        0.81            0.10        0.10

Matches are distributed among these distances:
  29    1  0.03
  30   20  0.59
  31    7  0.21
  32    6  0.18

ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45


Consensus pattern (32 bp):   
AAAATTATAATTTAATTATTTTAAAAATAATA
Done.