Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000364.1 Kokia drynarioides strain JFW-HI SEQ_111151, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5378
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.33


Found at i:1228 original size:11 final size:11

Alignment explanation


    Indices: 1214--1248  Score: 61
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       1204 TGTAAATTAT

                  *    
       1214 TATTTTAAAAA
          1 TATTTTTAAAA

                       
       1225 TATTTTTAAAA
          1 TATTTTTAAAA

                       
       1236 TATTTTTAAAA
          1 TATTTTTAAAA

              
       1247 TA
          1 TA

       1249 ATACTTCAAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (11 bp):   
TATTTTTAAAA

Found at i:1251 original size:25 final size:26

Alignment explanation


    Indices: 1195--1251  Score: 64
    Period size: 25  Copynumber: 2.2  Consensus size: 26

       1185 GAAATTACTT

                 *         *        * 
       1195 AAAATGTTTTGTAAATTATTATTTTA
          1 AAAATATTTTGTAAAATATTATTTAA

                                      
       1221 AAAATATTTT-TAAAATATT-TTTAA
          1 AAAATATTTTGTAAAATATTATTTAA

                   
       1245 AATAATA
          1 AA-AATA

       1252 CTTCAAATAC


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  24    6  0.22
  25   12  0.44
  26    9  0.33

ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49


Consensus pattern (26 bp):   
AAAATATTTTGTAAAATATTATTTAA
Done.