Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003648.1 Kokia drynarioides strain JFW-HI SEQ_116550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1668
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Found at i:657 original size:24 final size:23

Alignment explanation


    Indices: 613--657  Score: 54
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        603 AACAGCAGCA

                    *      *       
        613 AAATAACATTAAAAATGACAACG
          1 AAATAACAGTAAAAACGACAACG

                  *               
        636 AAATAATAGTAAAAACGCACAA
          1 AAATAACAGTAAAAACG-ACAA

        658 AAAGCAACAC


Statistics
Matches: 18,  Mismatches: 3, Indels: 1
        0.82            0.14        0.05

Matches are distributed among these distances:
  23   14  0.78
  24    4  0.22

ACGTcount: A:0.62, C:0.13, G:0.09, T:0.16


Consensus pattern (23 bp):   
AAATAACAGTAAAAACGACAACG
Done.