Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003657.1 Kokia drynarioides strain JFW-HI SEQ_116564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4430
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:753 original size:80 final size:79

Alignment explanation


    Indices: 615--882  Score: 297
    Period size: 79  Copynumber: 3.4  Consensus size: 79

        605 ATAAACTGAC

                *       *           *            *        *  * *             
        615 AATCTTGGCACCTAGTGCCTAGCGAATAAACCGCAA-AAGTGAGCCCAAATCTAGTTGGATTAAC
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATTA-TGAGCCTAACTTTAGTTGGATTAAC

            *   *    * *    
        679 TAATGAATAGCTGTCA
         65 CAA-CAATATCCGTCA

             *                             *               *     *        *  
        695 ATTCCTGGCACCCAGTGCCTAGCGGATAAACAGCAATTATGAGCCTAGCTTTAATTGGATTAGCC
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATTATGAGCCTAACTTTAGTTGGATTAACC

                          
        760 AACAATATCCGTCA
         66 AACAATATCCGTCA

                             *    *                         *                
        774 AATCCTGGCACCCAGTGTCTAGTGGATAAACCGCAATTATGAG-CTCATCTTTAGTTGGATTAAC
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATTATGAGCCT-AACTTTAGTTGGATTAAC

                       *   
        838 CAACAATATCCATCA
         65 CAACAATATCCGTCA

                  **                      
        853 AATCCTATCACCCAGTGCCTAGCGGATAAA
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAA

        883 TCACAAAAGT


Statistics
Matches: 158,  Mismatches: 28, Indels: 5
        0.83            0.15        0.03

Matches are distributed among these distances:
  78    2  0.01
  79  103  0.65
  80   52  0.33
  81    1  0.01

ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25


Consensus pattern (79 bp):   
AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATTATGAGCCTAACTTTAGTTGGATTAACC
AACAATATCCGTCA

Done.