Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003658.1 Kokia drynarioides strain JFW-HI SEQ_116565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4430
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:908 original size:79 final size:79

Alignment explanation


    Indices: 615--908  Score: 304
    Period size: 79  Copynumber: 3.7  Consensus size: 79

        605 ATAAACTCAT

                *       *           *        *               *               
        615 AATCTTGGCACCTAGTGCCTAGCGAATAAACCGTAA-AAGTGAGCCCAAATCTAGTTGGATTAAC
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATAA-TGAGCCCAACTCTAGTTGGATTAAC

            *   *    * *    
        679 TAATGAATAGCTGTCA
         65 CAA-CAATATCCGTCA

             *                             *     *       * *  *  *           
        695 ATTCCTGGCACCCAGTGCCTAGCGGATAAACAGCAATTATGAGCCTAGCTTTAATTGGATTAACC
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATAATGAGCCCAACTCTAGTTGGATTAACC

                          
        760 AACAATATCCGTCA
         66 AACAATATCCGTCA

                             *    *              *     **  *  *              
        774 AATCCTGGCACCCAGTGTCTAGTGGATAAACCGCAATTATGAGTTCATCTTTAGTTGGATTAACC
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATAATGAGCCCAACTCTAGTTGGATTAACC

                      *   
        839 AACAATATCCATCA
         66 AACAATATCCGTCA

                  **                      *                          
        853 AATCCTATCACCCAGTGCCTAGCGGATAAATCGCAA-AAGTGAGCCCAACTCTAGTT
          1 AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATAA-TGAGCCCAACTCTAGTT

        909 AGTTAAACTG


Statistics
Matches: 176,  Mismatches: 36, Indels: 5
        0.81            0.17        0.02

Matches are distributed among these distances:
  78    1  0.01
  79  122  0.69
  80   52  0.30
  81    1  0.01

ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26


Consensus pattern (79 bp):   
AATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAATAATGAGCCCAACTCTAGTTGGATTAACC
AACAATATCCGTCA
Done.