Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003672.1 Kokia drynarioides strain JFW-HI SEQ_116592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1858
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34


Found at i:660 original size:25 final size:25

Alignment explanation


    Indices: 607--652  Score: 69
    Period size: 24  Copynumber: 1.9  Consensus size: 25

        597 GTTGGATCCA

                                     
        607 AATTAAATTCTAAAAAGATAATTTG
          1 AATTAAATTCTAAAAAGATAATTTG

                          *        
        632 AATTAAA-TCTAAACA-ATAATT
          1 AATTAAATTCTAAAAAGATAATT

        653 CTCTAATTGG


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    7  0.35
  25    7  0.35

ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35


Consensus pattern (25 bp):   
AATTAAATTCTAAAAAGATAATTTG

Found at i:739 original size:13 final size:13

Alignment explanation


    Indices: 718--751  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        708 ATAATATAAT

                         
        718 AATAATAATCCTA
          1 AATAATAATCCTA

                *        
        731 AATATTAATCCTA
          1 AATAATAATCCTA

              *     
        744 AAAAATAA
          1 AATAATAA

        752 AGTGTAAATT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29


Consensus pattern (13 bp):   
AATAATAATCCTA
Done.