Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003693.1 Kokia drynarioides strain JFW-HI SEQ_116624, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4926
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34


Found at i:126 original size:18 final size:18

Alignment explanation


    Indices: 103--141  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

         93 AAGGACTAAT

                               
        103 TTGTGAATCTGTAAAA-TG
          1 TTGTGAATCT-TAAAATTG

                              
        121 TTGTGAATCTTAAAATTG
          1 TTGTGAATCTTAAAATTG

               
        139 TTG
          1 TTG

        142 AATATGCTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  17    5  0.25
  18   15  0.75

ACGTcount: A:0.31, C:0.05, G:0.21, T:0.44


Consensus pattern (18 bp):   
TTGTGAATCTTAAAATTG
Done.