Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003696.1 Kokia drynarioides strain JFW-HI SEQ_116629, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9316
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:3838 original size:21 final size:22

Alignment explanation


    Indices: 3796--3839  Score: 63
    Period size: 24  Copynumber: 2.0  Consensus size: 22

       3786 TTATCAATTT

                                    
       3796 AAGTAATTATTTACTTTTAATATA
          1 AAGTAATTATTTA--TTTAATATA

                                 
       3820 AAGTAATTATTTA-TTAATAT
          1 AAGTAATTATTTATTTAATAT

       3840 TAATTTTTAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  21    7  0.35
  24   13  0.65

ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50


Consensus pattern (22 bp):   
AAGTAATTATTTATTTAATATA

Found at i:3932 original size:24 final size:24

Alignment explanation


    Indices: 3900--3947  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3890 ATCTCTTTGA

                *                   
       3900 TATTTTTATTATTTTTTATCAATT
          1 TATTATTATTATTTTTTATCAATT

                                    
       3924 TATTATTATTATTTTTTATCAATT
          1 TATTATTATTATTTTTTATCAATT

       3948 AGACTTTTTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69


Consensus pattern (24 bp):   
TATTATTATTATTTTTTATCAATT

Found at i:4389 original size:24 final size:24

Alignment explanation


    Indices: 4361--4416  Score: 103
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       4351 CATAAATAGG

                                    
       4361 AAAAAATTTAAAATTTTTTAAAAT
          1 AAAAAATTTAAAATTTTTTAAAAT

                        *           
       4385 AAAAAATTTAAATTTTTTTAAAAT
          1 AAAAAATTTAAAATTTTTTAAAAT

                    
       4409 AAAAAATT
          1 AAAAAATT

       4417 ATCATAAAAT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   31  1.00

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (24 bp):   
AAAAAATTTAAAATTTTTTAAAAT
Done.