Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000370.1 Kokia drynarioides strain JFW-HI SEQ_111161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30


Found at i:633 original size:21 final size:21

Alignment explanation


    Indices: 589--635  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        579 CTTGAGTCTG

                      *     ** * 
        589 AATTCGAAGTCTATTTTGTTA
          1 AATTCGAAGTATATTTCATCA

                                 
        610 AATTCGAAGTATATTTCATCA
          1 AATTCGAAGTATATTTCATCA

                 
        631 AATTC
          1 AATTC

        636 AAACCCGAAA


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43


Consensus pattern (21 bp):   
AATTCGAAGTATATTTCATCA
Done.