Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003702.1 Kokia drynarioides strain JFW-HI SEQ_116639, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1766
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33


Found at i:211 original size:19 final size:18

Alignment explanation


    Indices: 187--244  Score: 57
    Period size: 18  Copynumber: 3.1  Consensus size: 18

        177 CTTTTAAATG

                               
        187 ATTTTTTTATTAATTTTTA
          1 ATTTTTTTA-TAATTTTTA

                     *         
        206 A-TTTTTTAAAACTTTTTA
          1 ATTTTTTTATAA-TTTTTA

                                
        224 ATTTTATTTA-ATATTTTTA
          1 ATTTT-TTTATA-ATTTTTA

              
        243 AT
          1 AT

        245 AAATTTTAAA


Statistics
Matches: 34,  Mismatches: 1, Indels: 8
        0.79            0.02        0.19

Matches are distributed among these distances:
  17    2  0.06
  18   14  0.41
  19   13  0.38
  20    5  0.15

ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67


Consensus pattern (18 bp):   
ATTTTTTTATAATTTTTA

Found at i:233 original size:10 final size:9

Alignment explanation


    Indices: 199--245  Score: 51
    Period size: 10  Copynumber: 5.1  Consensus size: 9

        189 TTTTTTATTA

                     
        199 ATTTTTAAT
          1 ATTTTTAAT

                    *
        208 -TTTTTAAA
          1 ATTTTTAAT

                      
        216 ACTTTTTAAT
          1 A-TTTTTAAT

            *         
        226 TTTATTTAAT
          1 ATT-TTTAAT

                     
        236 ATTTTTAAT
          1 ATTTTTAAT

             
        245 A
          1 A

        246 AATTTTAAAA


Statistics
Matches: 31,  Mismatches: 4, Indels: 6
        0.76            0.10        0.15

Matches are distributed among these distances:
   8    7  0.23
   9    9  0.29
  10   15  0.48

ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64


Consensus pattern (9 bp):   
ATTTTTAAT
Done.