Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003708.1 Kokia drynarioides strain JFW-HI SEQ_116649, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4136
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:3091 original size:10 final size:10

Alignment explanation


    Indices: 3076--3119  Score: 52
    Period size: 10  Copynumber: 4.4  Consensus size: 10

       3066 AAATAAAATT

                      
       3076 TTTATTTTTA
          1 TTTATTTTTA

                      
       3086 TTTATTTTTA
          1 TTTATTTTTA

             **  *    
       3096 TACATATTTA
          1 TTTATTTTTA

                    * 
       3106 TTTATTTTCA
          1 TTTATTTTTA

                
       3116 TTTA
          1 TTTA

       3120 CCTATGCATA


Statistics
Matches: 27,  Mismatches: 7, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  10   27  1.00

ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70


Consensus pattern (10 bp):   
TTTATTTTTA
Done.