Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003711.1 Kokia drynarioides strain JFW-HI SEQ_116654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2388
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.37


Found at i:1714 original size:26 final size:26

Alignment explanation


    Indices: 1685--1735  Score: 102
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1675 TTTCAATCAG

                                      
       1685 TTTTCTCATTTTTTATTAGACTAAGA
          1 TTTTCTCATTTTTTATTAGACTAAGA

                                     
       1711 TTTTCTCATTTTTTATTAGACTAAG
          1 TTTTCTCATTTTTTATTAGACTAAG

       1736 GATATGTTTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55


Consensus pattern (26 bp):   
TTTTCTCATTTTTTATTAGACTAAGA
Done.