Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003717.1 Kokia drynarioides strain JFW-HI SEQ_116668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2363
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35


Found at i:1937 original size:66 final size:66

Alignment explanation


    Indices: 1855--1986  Score: 255
    Period size: 66  Copynumber: 2.0  Consensus size: 66

       1845 AAGTCCATCG

                                                                             
       1855 GCATCACCCACCATGTCACCGACTTCAAGCGCCACCCCCTCTCCCGTTGCCACTCCACCACCAAC
          1 GCATCACCCACCATGTCACCGACTTCAAGCGCCACCCCCTCTCCCGTTGCCACTCCACCACCAAC

             
       1920 C
         66 C

                                          *                                  
       1921 GCATCACCCACCATGTCACCGACTTCAAGCTCCACCCCCTCTCCCGTTGCCACTCCACCACCAAC
          1 GCATCACCCACCATGTCACCGACTTCAAGCGCCACCCCCTCTCCCGTTGCCACTCCACCACCAAC

             
       1986 C
         66 C

       1987 ACCATTACAC


Statistics
Matches: 65,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  66   65  1.00

ACGTcount: A:0.21, C:0.53, G:0.10, T:0.16


Consensus pattern (66 bp):   
GCATCACCCACCATGTCACCGACTTCAAGCGCCACCCCCTCTCCCGTTGCCACTCCACCACCAAC
C
Done.