Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003721.1 Kokia drynarioides strain JFW-HI SEQ_116674, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37


Found at i:1089 original size:14 final size:14

Alignment explanation


    Indices: 1049--1092  Score: 56
    Period size: 12  Copynumber: 3.2  Consensus size: 14

       1039 TTTATTTTTG

                        *  
       1049 TTTTACTATTTTCAT
          1 TTTTA-TATTTTAAT

                          
       1064 TTTTA-A-TTTAAT
          1 TTTTATATTTTAAT

                          
       1076 TTTTATATTTTAAT
          1 TTTTATATTTTAAT

               
       1090 TTT
          1 TTT

       1093 CTCCCTTTTA


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  12   10  0.38
  13    2  0.08
  14    9  0.35
  15    5  0.19

ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70


Consensus pattern (14 bp):   
TTTTATATTTTAAT
Done.