Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003722.1 Kokia drynarioides strain JFW-HI SEQ_116676, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11838
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:215 original size:52 final size:52

Alignment explanation


    Indices: 137--322  Score: 203
    Period size: 52  Copynumber: 3.6  Consensus size: 52

        127 AATGAAAAAG

                    *     *    *                                
        137 GGTCCGATAACTATTTGTCGTCATGAGTATATGAATCCTTTACGGATTATGA
          1 GGTCCGATGACTATATGTCATCATGAGTATATGAATCCTTTACGGATTATGA

                                                   *    *       
        189 GGTCCGATGACTATATGTCATCATGAGTATATGAATCCTCTACGAATTATGA
          1 GGTCCGATGACTATATGTCATCATGAGTATATGAATCCTTTACGGATTATGA

                  *                *     *     *     *     ** *  
        241 GGTCCGGTGACTA-AGTGTCATCGTGAGTGTATGATTCCTTAACGGAACAAGA
          1 GGTCCGATGACTATA-TGTCATCATGAGTATATGAATCCTTTACGGATTATGA

                *         *   *   *       
        293 GGTCTGATGACTATGTGTTATCGTGAGTAT
          1 GGTCCGATGACTATATGTCATCATGAGTAT

        323 CAAATGAAAT


Statistics
Matches: 112,  Mismatches: 20, Indels: 4
        0.82            0.15        0.03

Matches are distributed among these distances:
  51    1  0.01
  52  111  0.99

ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33


Consensus pattern (52 bp):   
GGTCCGATGACTATATGTCATCATGAGTATATGAATCCTTTACGGATTATGA
Done.