genome.fa.s3725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003725.1 Kokia drynarioides strain JFW-HI SEQ_116680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57217

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306--471	51	3.3	51	86	3	244	22	48	5	24	1.71
2405--2440	17	2.1	17	89	0	54	50	2	0	47	1.15
5047--5137	47	2.0	47	84	2	121	46	4	3	46	1.39
7871--7958	43	2.0	44	82	2	106	17	15	36	30	1.91
7978--8086	56	1.9	56	83	3	139	19	19	33	27	1.96
8578--8765	97	1.9	98	82	5	238	38	13	15	31	1.87
9089--9551	88	5.3	87	76	12	331	39	2	24	33	1.69
8994--9179	59	3.2	57	77	9	187	41	4	24	30	1.74
9148--9609	29	15.8	28	69	15	204	38	2	24	34	1.68
9448--9601	59	2.6	60	80	5	181	38	1	22	37	1.65
10745--10811	3	22.0	3	80	3	71	32	0	5	61	1.20
13009--13041	2	16.5	2	93	0	57	48	0	51	0	1.00
20672--20717	23	2.1	22	84	11	60	13	10	0	76	1.03
22148--22190	21	2.0	21	82	8	52	23	13	23	39	1.90
24642--24724	17	4.8	17	86	1	103	33	1	3	61	1.21
26529--26839	29	10.8	29	72	12	194	36	21	5	36	1.76
26529--26811	87	3.3	86	81	7	281	36	21	4	36	1.75
26762--26863	29	3.6	27	72	18	73	34	25	8	31	1.87
28484--28525	10	4.1	10	84	6	57	19	0	2	78	0.86
30145--30185	20	2.0	20	90	0	64	46	12	9	31	1.74
30983--31014	5	6.8	5	86	13	50	62	0	37	0	0.95
39128--39187	26	2.4	24	75	8	57	28	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43771--43822	3	17.3	3	100	0	104	67	0	0	32	0.91
50804--50841	15	2.5	15	91	0	58	26	34	10	28	1.90
52236--52375	72	1.9	72	97	2	264	42	17	11	28	1.83
55647--55790	56	2.6	54	83	6	173	32	15	18	34	1.92
55754--55903	56	2.6	58	85	5	223	28	16	14	41	1.87
55871--56018	75	2.0	75	84	10	196	25	18	16	38	1.92
55984--56120	59	2.3	60	83	5	172	24	16	17	40	1.90
56067--56158	48	1.9	48	84	8	125	31	15	11	41	1.83
57171--57217	2	23.5	2	100	0	94	51	0	0	48	1.00

Tables:   1

The End!