Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003729.1 Kokia drynarioides strain JFW-HI SEQ_116686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1325
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33


Found at i:667 original size:13 final size:13

Alignment explanation


    Indices: 649--683  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        639 TTTAATTTAA

                         
        649 TTTAATATTGAAT
          1 TTTAATATTGAAT

                         
        662 TTTAATATTGAAT
          1 TTTAATATTGAAT

                *    
        675 TTTATTATT
          1 TTTAATATT

        684 ATTCTAATTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60


Consensus pattern (13 bp):   
TTTAATATTGAAT
Done.