Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003730.1 Kokia drynarioides strain JFW-HI SEQ_116687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8276
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28


Found at i:2158 original size:129 final size:130

Alignment explanation


    Indices: 1905--2161  Score: 426
    Period size: 129  Copynumber: 2.0  Consensus size: 130

       1895 AGCTCTAGAA

                                                         *                   
       1905 TTAGAATTTGTTAAATGGTGTTATCCCCACATCTATTGAGTATTGGGTTTCCCATCCCCTCTATC
          1 TTAGAATTTGTTAAATGGTGTTATCCCCACATCTATTGAGTATTGAGTTTCCCATCCCCTCTATC

                                            *             *       *          
       1970 TATAACCAATTGATTTTAGAGTTTTATACTTAGCATAGTATCAGAGCCCAAGTGTGTTCTACTGT
         66 TATAACCAATTGATTTTAGAGTTTTATACTTAACATAGTATCAGAGACCAAGTGCGTTCTACTGT

                          *                                                  
       2035 TTAGAATTTGTT-AGTGGTGTTATCCCCACATCTATTGAGTATTGAGTTTCCCATCCCCTCTATC
          1 TTAGAATTTGTTAAATGGTGTTATCCCCACATCTATTGAGTATTGAGTTTCCCATCCCCTCTATC

                 *             *                     *        *            
       2099 TATAAGCAATTGATTTTAGGGTTTTATACTTAACATAGTATTAGAGACCAGGTGCGTTCTACT
         66 TATAACCAATTGATTTTAGAGTTTTATACTTAACATAGTATCAGAGACCAAGTGCGTTCTACT

       2162 TTTCCTCTGC


Statistics
Matches: 118,  Mismatches: 9, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
 129  106  0.90
 130   12  0.10

ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39


Consensus pattern (130 bp):   
TTAGAATTTGTTAAATGGTGTTATCCCCACATCTATTGAGTATTGAGTTTCCCATCCCCTCTATC
TATAACCAATTGATTTTAGAGTTTTATACTTAACATAGTATCAGAGACCAAGTGCGTTCTACTGT
Done.