Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003731.1 Kokia drynarioides strain JFW-HI SEQ_116688, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1111
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39


Found at i:384 original size:216 final size:214

Alignment explanation


    Indices: 8--1111  Score: 1052
    Period size: 216  Copynumber: 5.1  Consensus size: 214

          1 AACTATC

                 *      *                                  *                 
          8 CAAGATGATCCAGTCCTTCGAGCAATATTCCGAACATTCCATGCTCGGGAAATCGCATCATTCGG
          1 CAAGACGATCCATTCCTTCGAGCAAT-TTCCGAACATTCCATGCTCGAGAAATCGCATCATT-GG

              *          *             *         * **         *              
         73 TCAAAATAGTTTTCCATTTCGTAAAAAAAACTTTTGGACACTGAATTAAATACTTATTTATTTGT
         64 TCTAAATAGTTTTTCATTTCGT--AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTG-

                                    *                  **          * *    *  
        138 A-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGGAAAACTTTTACTATTTCTGTT
        126 AGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTT

                   *                
        202 ATAACTTCGGTTCCTTAAAGTATT
        191 ATAACTTAGGTTCCTTAAAGTATT

                 *        *              **                      *           
        226 CAAGATGATCCATTTCTTCGAGCAACTTTATGAACATTCCATGCTCGAGAAATTGCATCACTTGG
          1 CAAGACGATCCATTCCTTCGAGCAA-TTTCCGAACATTCCATGCTCGAGAAATCGCATCA-TTGG

                                                                             
        291 TCTAAATAGTTTTTCATTTCGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGA
         64 TCTAAATAGTTTTTCATTTCGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGA

                                                   **    *                   
        356 ATTGTTTCTCTCTTGGTTCTTAGACGAAC-TTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTAT
        129 ATTGTTTCTCTCTTGGTTCTTAGACGAACTTTC-GAACTAGTCAAACTTTTACGAGTTCTTTTAT

            ** *        *         
        420 GGCATAGGTTCCCTAAAGTATT
        193 AACTTAGGTTCCTTAAAGTATT

                **         *   * *         *       *                         
        442 CAAGGTGATCCATTCTTTCAACCAATATTCCAAACATTCTATGCTCGAGAAATCGCATCATTCGG
          1 CAAGACGATCCATTCCTTCGAGCAAT-TTCCGAACATTCCATGCTCGAGAAATCGCATCATT-GG

                                                                             
        507 TCTAAATA-TTTTGTCATTTTC-TAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTATTATG
         64 TCTAAATAGTTTT-TCA-TTTCGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATT-TG

                         *  **         *      *      *                       
        569 AGAATTGTTTCTCACTAAGTTCTTAGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
        126 AGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTT

                  *               *   
        634 GA-AACATAGGTTCCTCT-AAGCATT
        191 -ATAACTTAGGTTCCT-TAAAGTATT

               *                *          *         *   * *                 
        658 CTATG-CGATCCATTCCTTCTA-CAAATTTTTCGAACATTCAATGTTTG-GAAAATCGCATCATT
          1 C-AAGACGATCCATTCCTTCGAGC-AA-TTTCCGAACATTCCATGCTCGAG-AAATCGCATCA-T

              *            *      *  *                                    *  
        720 TGATCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG
         61 TGGTCTAAATAGTTTTTCATTTCGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTG

             *                       *        **          *               *  
        785 AAAATT-TTCTCTCTCTTGGTTCTTGGACGAACTACCGAAC-ATGTAAAACTTTTACGAGTTATT
        126 AGAATTGTT-TCTCTCTTGGTTCTTAGACGAACTTTCGAACTA-GTCAAACTTTTACGAGTTCTT

                     *                
        848 TTATAACTTCGGTTCCTTAAAGTATT
        189 TTATAACTTAGGTTCCTTAAAGTATT

                  *    *  *        *        *      *              *      *   
        874 CAAGACCATCCGTTTCTGT-GAGAAATTTTCCAAACATTTCATGCTCGAGAAATTGCATCTTTTG
          1 CAAGACGATCCATTCCT-TCGAGCAA-TTTCCGAACATTCCATGCTCGAGAAATCGCATC-ATTG

                   *     *      * *       *          **  *              **   
        938 GTCTAAAAAG-TTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTTACGTGA
         63 GTCTAAATAGTTTTTCATTTCGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTGA

                  * *               *       *                                
       1002 GAATTGCTACTGCT-TTGGTTCTTTGAC-AACCTTCTGAACTAGTCAAACTTTTTACGAGTTCTT
        127 GAATTGTTTCT-CTCTTGGTTCTTAGACGAACTTTC-GAACTAGTCAAAC-TTTTACGAGTTCTT

                     *     *       *  
       1065 TTATAACTTTGGTTCATTAAAGTTTT
        189 TTATAACTTAGGTTCCTTAAAGTATT

                                 
       1091 CAAGACGATCCATTCCTTCGA
          1 CAAGACGATCCATTCCTTCGA


Statistics
Matches: 737,  Mismatches: 113, Indels: 73
        0.80            0.12        0.08

Matches are distributed among these distances:
 215   44  0.06
 216  538  0.73
 217   78  0.11
 218   74  0.10
 219    3  0.00

ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39


Consensus pattern (214 bp):   
CAAGACGATCCATTCCTTCGAGCAATTTCCGAACATTCCATGCTCGAGAAATCGCATCATTGGTC
TAAATAGTTTTTCATTTCGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAAT
TGTTTCTCTCTTGGTTCTTAGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTATAAC
TTAGGTTCCTTAAAGTATT

Done.