Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003733.1 Kokia drynarioides strain JFW-HI SEQ_116690, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6772
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34


Found at i:1713 original size:12 final size:11

Alignment explanation


    Indices: 1694--1736  Score: 50
    Period size: 12  Copynumber: 3.6  Consensus size: 11

       1684 AGCATTTAAA

                       
       1694 TTTTTTTCTTT
          1 TTTTTTTCTTT

                         
       1705 TTCTTTTTCTTCT
          1 TT-TTTTTCTT-T

                 *     
       1718 TTTTTCTCTTT
          1 TTTTTTTCTTT

                    
       1729 TTTGTTTT
          1 TTT-TTTT

       1737 TCAAGTGACT


Statistics
Matches: 27,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  11    6  0.22
  12   18  0.67
  13    3  0.11

ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84


Consensus pattern (11 bp):   
TTTTTTTCTTT

Found at i:1717 original size:15 final size:14

Alignment explanation


    Indices: 1694--1738  Score: 54
    Period size: 15  Copynumber: 3.0  Consensus size: 14

       1684 AGCATTTAAA

                          
       1694 TTTTTTTCTTTTTC
          1 TTTTTTTCTTTTTC

                            
       1708 TTTTTCTTCTTTTTTC
          1 TTTTT-TTC-TTTTTC

                    *      
       1724 TCTTTTTTGTTTTTC
          1 T-TTTTTTCTTTTTC

       1739 AAGTGACTGA


Statistics
Matches: 27,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  14    5  0.19
  15    9  0.33
  16    9  0.33
  17    4  0.15

ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82


Consensus pattern (14 bp):   
TTTTTTTCTTTTTC
Done.