Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003734.1 Kokia drynarioides strain JFW-HI SEQ_116691, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10865
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Found at i:694 original size:6 final size:6
Alignment explanation
Indices: 651--766 Score: 100
Period size: 6 Copynumber: 20.0 Consensus size: 6
641 TTTTATTTAT
* * *
651 TTTAAA TTTTAAA TTTGAAA -ATAAT TTTAAA CTT-AA TTTAAA TTTAAA
1 TTTAAA -TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
699 CTT-AA TTTAAA TTTAAA CTT-AA TTTAAA TTTAAA TTTAAA -ATAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
744 TTTAAT TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA
767 GGGAGTATGG
Statistics
Matches: 86, Mismatches: 16, Indels: 15
0.74 0.14 0.13
Matches are distributed among these distances:
5 22 0.26
6 55 0.64
7 9 0.10
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:697 original size:11 final size:11
Alignment explanation
Indices: 645--765 Score: 75
Period size: 11 Copynumber: 10.5 Consensus size: 11
635 TTTGGATTTT
*
645 ATTTATTTTAA
1 ATTTAATTTAA
656 ATTTTAAATTTGAA
1 A-TTT-AATTT-AA
*
670 A-ATAATTTTAA
1 ATTTAA-TTTAA
*
681 ACTTAATTTAA
1 ATTTAATTTAA
*
692 ATTTAAACTT-A
1 ATTT-AATTTAA
703 ATTTAAATTTAA
1 ATTT-AATTTAA
*
715 ACTTAATTTAA
1 ATTTAATTTAA
726 ATTTAAATTTAA
1 ATTT-AATTTAA
* *
738 AATAAATTTAA
1 ATTTAATTTAA
* **
749 TTTTAAAATAA
1 ATTTAATTTAA
760 ATTTAA
1 ATTTAA
766 AGGGAGTATG
Statistics
Matches: 86, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
11 52 0.60
12 27 0.31
13 4 0.05
14 3 0.03
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (11 bp):
ATTTAATTTAA
Found at i:698 original size:17 final size:17
Alignment explanation
Indices: 676--748 Score: 119
Period size: 17 Copynumber: 4.3 Consensus size: 17
666 TGAAAATAAT
676 TTTAAACTTAATTTAAA
1 TTTAAACTTAATTTAAA
693 TTTAAACTTAATTTAAA
1 TTTAAACTTAATTTAAA
710 TTTAAACTTAATTTAAA
1 TTTAAACTTAATTTAAA
* **
727 TTTAAATTTAAAATAAA
1 TTTAAACTTAATTTAAA
744 TTTAA
1 TTTAA
749 TTTTAAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 53 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTAAACTTAATTTAAA
Found at i:719 original size:34 final size:34
Alignment explanation
Indices: 651--766 Score: 133
Period size: 34 Copynumber: 3.4 Consensus size: 34
641 TTTTATTTAT
* *
651 TTTAAATTTTAAATTTGAAAATAATTTTAAACTTAA
1 TTTAAA-TTTAAACTT-AAAATAAATTTAAACTTAA
**
687 TTTAAATTTAAACTTAATTTAAATTTAAACTTAA
1 TTTAAATTTAAACTTAAAATAAATTTAAACTTAA
* **
721 TTTAAATTTAAATTTAAAATAAATTTAATTTTAA
1 TTTAAATTTAAACTTAAAATAAATTTAAACTTAA
**
755 AATAAATTTAAA
1 TTTAAATTTAAA
767 GGGAGTATGG
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
34 55 0.80
35 8 0.12
36 6 0.09
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.47
Consensus pattern (34 bp):
TTTAAATTTAAACTTAAAATAAATTTAAACTTAA
Found at i:753 original size:17 final size:17
Alignment explanation
Indices: 653--766 Score: 111
Period size: 17 Copynumber: 6.6 Consensus size: 17
643 TTATTTATTT
653 TAAATTTTAAATTTGAAAA
1 TAAA-TTTAAATTT-AAAA
* * **
672 TAATTTTAAACTTAATT
1 TAAATTTAAATTTAAAA
* **
689 TAAATTTAAACTTAATT
1 TAAATTTAAATTTAAAA
* **
706 TAAATTTAAACTTAATT
1 TAAATTTAAATTTAAAA
723 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
740 TAAATTTAATTTTAAAA
1 TAAATTTAAATTTAAAA
757 TAAATTTAAA
1 TAAATTTAAA
767 GGGAGTATGG
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
17 74 0.87
18 8 0.09
19 3 0.04
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.46
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:766 original size:23 final size:23
Alignment explanation
Indices: 651--755 Score: 106
Period size: 23 Copynumber: 4.5 Consensus size: 23
641 TTTTATTTAT
*
651 TTTAAATTTTAAATTTGAAAATAAT
1 TTTAAA-TTTAAATTT-AAAATAAA
* *
676 TTTAAACTT-AATTTAAATTTAAA
1 TTTAAATTTAAATTTAAA-ATAAA
* * *
699 CTT-AATTTAAATTTAAACTTAA
1 TTTAAATTTAAATTTAAAATAAA
721 TTTAAATTTAAATTTAAAATAAA
1 TTTAAATTTAAATTTAAAATAAA
*
744 TTTAATTTTAAA
1 TTTAAATTTAAA
756 ATAAATTTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
22 12 0.18
23 46 0.70
24 2 0.03
25 6 0.09
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.48
Consensus pattern (23 bp):
TTTAAATTTAAATTTAAAATAAA
Found at i:1570 original size:12 final size:12
Alignment explanation
Indices: 1545--1589 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
1535 TTATTGAGAG
*
1545 AAAGGTAAAGGGA
1 AAAGG-AAATGGA
1558 AAAGGAAATGGA
1 AAAGGAAATGGA
*
1570 AATGGAAATGGA
1 AAAGGAAATGGA
1582 AAGAGGAA
1 AA-AGGAA
1590 CAAAAAATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.56, C:0.00, G:0.36, T:0.09
Consensus pattern (12 bp):
AAAGGAAATGGA
Found at i:2766 original size:17 final size:17
Alignment explanation
Indices: 2744--2797 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
2734 AAAGATATTT
*
2744 TATTATATTCATATTAA
1 TATTATATTAATATTAA
*
2761 TATTATA--AATTTTAA
1 TATTATATTAATATTAA
* *
2776 TAATATTTTAATATTAA
1 TATTATATTAATATTAA
2793 TATTA
1 TATTA
2798 ACAAAAATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 11 0.38
17 18 0.62
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTATATTAATATTAA
Found at i:2950 original size:31 final size:32
Alignment explanation
Indices: 2901--2961 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
2891 CAATAATACT
*
2901 TTTTATTTAATTTTAATAT-TAATATTTTCTA
1 TTTTATTTAATTTCAATATATAATATTTTCTA
2932 TTTTA-TTATATTTCAATATAATAATATTTT
1 TTTTATTTA-ATTTCAATAT-ATAATATTTT
2962 ATTATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 3 0.12
31 14 0.54
33 9 0.35
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (32 bp):
TTTTATTTAATTTCAATATATAATATTTTCTA
Found at i:3992 original size:22 final size:22
Alignment explanation
Indices: 3967--4010 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
3957 ATTTATAATT
3967 TTTATAAAATTAAT-AAAACATA
1 TTTA-AAAATTAATAAAAACATA
* *
3989 TTTAAAATTTTATAAAAACATA
1 TTTAAAAATTAATAAAAACATA
4011 AAATGTCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
TTTAAAAATTAATAAAAACATA
Found at i:4075 original size:20 final size:19
Alignment explanation
Indices: 4048--4105 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
4038 AAATATCATT
4048 TAAAATATTAAAATTGATA
1 TAAAATATTAAAATTGATA
*
4067 TAAACATATAAAAATT-ATA
1 TAAA-ATATTAAAATTGATA
*
4086 -AAAAAATCATAAAATTGATA
1 TAAAATAT--TAAAATTGATA
4106 AATATCAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 3 0.09
18 3 0.09
19 13 0.41
20 13 0.41
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
TAAAATATTAAAATTGATA
Found at i:4087 original size:28 final size:29
Alignment explanation
Indices: 4018--4089 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 29
4008 ATAAAATGTC
*
4018 ATAATAATTATAAAAATGATAAATATCAT
1 ATAAAAATTATAAAAATGATAAATATCAT
* *
4047 -TTAAAA-TATTAAAATTGATATAA-A-CAT
1 ATAAAAATTA-TAAAAATGATA-AATATCAT
4074 ATAAAAATTATAAAAA
1 ATAAAAATTATAAAAA
4090 AATCATAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
27 5 0.15
28 25 0.74
29 4 0.12
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (29 bp):
ATAAAAATTATAAAAATGATAAATATCAT
Found at i:4106 original size:20 final size:19
Alignment explanation
Indices: 4049--4107 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
4039 AATATCATTT
*
4049 AAAATATTAAAATTGATATA
1 AAAATA-TAAAATTGATAAA
*
4069 AACATATAAAAATT-ATAAA
1 AAAATAT-AAAATTGATAAA
4088 AAAATCATAAAATTGATAAA
1 AAAAT-ATAAAATTGATAAA
4108 TATCAATCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (19 bp):
AAAATATAAAATTGATAAA
Found at i:4501 original size:15 final size:15
Alignment explanation
Indices: 4481--4510 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4471 TCCATAAACT
4481 TCGCAAAAGGTAAAG
1 TCGCAAAAGGTAAAG
4496 TCGCAAAAGGTAAAG
1 TCGCAAAAGGTAAAG
4511 CAATAGCGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.27, T:0.13
Consensus pattern (15 bp):
TCGCAAAAGGTAAAG
Found at i:4501 original size:55 final size:55
Alignment explanation
Indices: 4440--4550 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
4430 GAAAGAAAAC
** *
4440 GTCGCAAAAGGTAAAGCAATAGCGGCGTTTTTCCATAAACTTCGCAAAAGGTAAA
1 GTCGCAAAAGGTAAAGCAATAGCGGCGTTTTTCCATAAACGCCACAAAAGGTAAA
4495 GTCGCAAAAGGTAAAGCAATAGCGGCGTTTTTCCATAAACGCCACAAAAGGTAAA
1 GTCGCAAAAGGTAAAGCAATAGCGGCGTTTTTCCATAAACGCCACAAAAGGTAAA
4550 G
1 G
4551 CAATAGCGGC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.20
Consensus pattern (55 bp):
GTCGCAAAAGGTAAAGCAATAGCGGCGTTTTTCCATAAACGCCACAAAAGGTAAA
Found at i:4625 original size:41 final size:41
Alignment explanation
Indices: 4580--4805 Score: 202
Period size: 41 Copynumber: 5.5 Consensus size: 41
4570 AAAAACGCTA
* * *
4580 CTAAAGGTCAGAGCATTAGCGGCGTTTATGATAAAGCGTCG
1 CTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAGCGCCG
* * * * *
4621 CTAAAGGTTAGAGTA-TATCGGCGCTTAAGGGAAAGCGCCG
1 CTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAGCGCCG
* ** * * * *
4661 CTAAAGGTCAAAGCATTAGCAACACTTATGGGAAAGCACCC
1 CTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAGCGCCG
* * * * *
4702 CTAAAGGTCAGAGCATTAGCGGGGCTCATGCGAAACCGCTG
1 CTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAGCGCCG
* * * **
4743 CTAAAGATCAGAGCATTAGCGCCGTTTATGAGAAAATGCCG
1 CTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAGCGCCG
* *
4784 CTAAATGTTAGAGCATTAGCGG
1 CTAAAGGTCAGAGCATTAGCGG
4806 TGTTTATGGG
Statistics
Matches: 142, Mismatches: 42, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
40 31 0.22
41 111 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (41 bp):
CTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAGCGCCG
Found at i:4772 original size:82 final size:82
Alignment explanation
Indices: 4575--4805 Score: 230
Period size: 82 Copynumber: 2.8 Consensus size: 82
4565 ATAGAAAAAA
* * * * * *
4575 CGCTACTAAAGGTCAGAGCATTAGCGGCGTTTATGATAAAGCGTCGCTAAAGGTTAGAGTA-TAT
1 CGCTGCTAAAGGTCAGAGCATTAGCGACGTTTATGAGAAAGCGCCGCTAAAGGTTAGAGCATTAG
* * *
4639 CGGCGCTTAAGGGAAAG
66 CGGCGCTCAAGCGAAAC
* * * ** * * * *
4656 CGCCGCTAAAGGTCAAAGCATTAGCAACACTTATGGGAAAGCACCCCTAAAGGTCAGAGCATTAG
1 CGCTGCTAAAGGTCAGAGCATTAGCGACGTTTATGAGAAAGCGCCGCTAAAGGTTAGAGCATTAG
* *
4721 CGGGGCTCATGCGAAAC
66 CGGCGCTCAAGCGAAAC
* * ** *
4738 CGCTGCTAAAGATCAGAGCATTAGCGCCGTTTATGAGAAAATGCCGCTAAATGTTAGAGCATTAG
1 CGCTGCTAAAGGTCAGAGCATTAGCGACGTTTATGAGAAAGCGCCGCTAAAGGTTAGAGCATTAG
4803 CGG
66 CGG
4806 TGTTTATGGG
Statistics
Matches: 115, Mismatches: 34, Indels: 1
0.77 0.23 0.01
Matches are distributed among these distances:
81 47 0.41
82 68 0.59
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (82 bp):
CGCTGCTAAAGGTCAGAGCATTAGCGACGTTTATGAGAAAGCGCCGCTAAAGGTTAGAGCATTAG
CGGCGCTCAAGCGAAAC
Found at i:7365 original size:43 final size:43
Alignment explanation
Indices: 7292--7377 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
7282 TTTATTAATG
* ** *
7292 TTAGCGGCGTTTGTGGGAAAAGCATTACTAAAGCCCATGTTCT
1 TTAGCAGCGTTTGTGGGAAAAGCACCACTAAAGACCATGTTCT
* * *
7335 TTAGCAGCGTTTGTGGGATAAGCGCCACTAAAGATCATGTTCT
1 TTAGCAGCGTTTGTGGGAAAAGCACCACTAAAGACCATGTTCT
7378 ATAATAACTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
TTAGCAGCGTTTGTGGGAAAAGCACCACTAAAGACCATGTTCT
Found at i:7789 original size:18 final size:17
Alignment explanation
Indices: 7755--7826 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 17
7745 TTTAAATAAC
7755 TTTTTATATATTTT-TATA
1 TTTTTATA-ATTTTAT-TA
7773 TTATTTATAAATTTTATTA
1 TT-TTTAT-AATTTTATTA
*
7792 GTTTTTTTTAATTTTATTAA
1 --TTTTTATAATTTTATT-A
7812 TTTTTATAATTTTAT
1 TTTTTATAATTTTAT
7827 AGGTTTTGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
18 16 0.35
19 21 0.46
20 7 0.15
21 2 0.04
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.69
Consensus pattern (17 bp):
TTTTTATAATTTTATTA
Found at i:7804 original size:19 final size:18
Alignment explanation
Indices: 7755--7826 Score: 67
Period size: 18 Copynumber: 3.8 Consensus size: 18
7745 TTTAAATAAC
7755 TTTTTAT-ATATTT-TTATA
1 TTTTTATAAT-TTTATTA-A
*
7773 TTATTTATAAATTTTATTAGT
1 TT-TTTAT-AATTTTATTA-A
*
7794 TTTTTTTAATTTTATTAA
1 TTTTTATAATTTTATTAA
7812 TTTTTATAATTTTAT
1 TTTTTATAATTTTAT
7827 AGGTTTTGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
18 16 0.36
19 15 0.33
20 7 0.16
21 7 0.16
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.69
Consensus pattern (18 bp):
TTTTTATAATTTTATTAA
Found at i:8020 original size:9 final size:9
Alignment explanation
Indices: 7750--8091 Score: 89
Period size: 10 Copynumber: 36.2 Consensus size: 9
7740 AAGGGTTTAA
7750 ATAACTTTTT
1 ATAA-TTTTT
7760 ATATATTTTT
1 ATA-ATTTTT
7770 AT-ATTATTT
1 ATAATT-TTT
*
7779 ATAAATTTT
1 ATAATTTTT
*
7788 ATTAGTTTTTT
1 A-TA-ATTTTT
*
7799 TTAA-TTTT
1 ATAATTTTT
7807 ATTAATTTTT
1 A-TAATTTTT
7817 ATAA-TTTT
1 ATAATTTTT
*
7825 ATAGGTTTTGT
1 ATA-ATTTT-T
7836 -TATATTTTCT
1 ATA-ATTTT-T
* **
7846 AAAATAATT
1 ATAATTTTT
7855 ATAAGTTTTT
1 ATAA-TTTTT
*
7865 ATGATTTTT
1 ATAATTTTT
*
7874 ATATTTTTT
1 ATAATTTTT
* *
7883 A-AACTTAT
1 ATAATTTTT
*
7891 ATCAATTTTA
1 AT-AATTTTT
7901 AT-A-TTTT
1 ATAATTTTT
7908 -TAATTTTT
1 ATAATTTTT
7916 AATTAATTTTTTT
1 -A-TAA--TTTTT
*
7929 ATAAGATTTT
1 ATAA-TTTTT
7939 A-AGATTTTTT
1 ATA-A-TTTTT
* *
7949 TTACGTTATTAT
1 ATA-ATT-TT-T
* *
7961 AAAATTTTAA
1 ATAATTTT-T
**
7971 ATAATTTAA
1 ATAATTTTT
*
7980 ATAAGTTTT
1 ATAATTTTT
7989 ATTAATTTTT
1 A-TAATTTTT
7999 -TAATTTATT
1 ATAATTT-TT
8008 ATAATTTTT
1 ATAATTTTT
**
8017 ATAACATTT
1 ATAATTTTT
8026 ATAATTTTAT
1 ATAATTTT-T
*
8036 ATCAATTTTA
1 AT-AATTTTT
8046 AT-ATTTTT
1 ATAATTTTT
*
8054 A-AATATTTA
1 ATAAT-TTTT
*
8063 ATAATGTTT
1 ATAATTTTT
**
8072 AGGATTTTT
1 ATAATTTTT
8081 A-ATATTTTT
1 ATA-ATTTTT
8090 AT
1 AT
8092 GAGATAATAT
Statistics
Matches: 241, Mismatches: 56, Indels: 70
0.66 0.15 0.19
Matches are distributed among these distances:
6 1 0.00
7 4 0.02
8 38 0.16
9 78 0.32
10 88 0.37
11 24 0.10
12 3 0.01
13 5 0.02
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (9 bp):
ATAATTTTT
Found at i:8062 original size:36 final size:37
Alignment explanation
Indices: 8011--8091 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 37
8001 ATTTATTATA
* *
8011 ATTTTTATAACATTT-ATAATTTTATATCAATTTTAAT
1 ATTTTTATAACATTTAATAATGTT-TAGCAATTTTAAT
* * *
8048 ATTTTTA-AATATTTAATAATGTTTAGGATTTTTAAT
1 ATTTTTATAACATTTAATAATGTTTAGCAATTTTAAT
8084 ATTTTTAT
1 ATTTTTAT
8092 GAGATAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
36 23 0.62
37 14 0.38
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (37 bp):
ATTTTTATAACATTTAATAATGTTTAGCAATTTTAAT
Done.