Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003737.1 Kokia drynarioides strain JFW-HI SEQ_116696, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2135
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:335 original size:18 final size:17

Alignment explanation


    Indices: 314--353  Score: 62
    Period size: 18  Copynumber: 2.3  Consensus size: 17

        304 AATTTCACCC

                              
        314 AAAAAAAGAAAAAAGAGA
          1 AAAAAAAGAAAAAAGA-A

                    *        
        332 AAAAAAAGGAAAAAGAA
          1 AAAAAAAGAAAAAAGAA

                 
        349 AAAAA
          1 AAAAA

        354 GAGGAGAAGT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  17    6  0.29
  18   15  0.71

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (17 bp):   
AAAAAAAGAAAAAAGAA

Found at i:358 original size:17 final size:17

Alignment explanation


    Indices: 314--358  Score: 58
    Period size: 17  Copynumber: 2.7  Consensus size: 17

        304 AATTTCACCC

                             
        314 AAAAAAAGA--AAAAAG
          1 AAAAAAAGAGGAAAAAG

                    *         
        329 AGAAAAAAAAGGAAAAAG
          1 A-AAAAAAGAGGAAAAAG

                        
        347 AAAAAAAGAGGA
          1 AAAAAAAGAGGA

        359 GAAGTCGAGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  15    1  0.04
  16    7  0.28
  17   10  0.40
  18    7  0.28

ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00


Consensus pattern (17 bp):   
AAAAAAAGAGGAAAAAG
Done.