Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003740.1 Kokia drynarioides strain JFW-HI SEQ_116700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2369
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.41


Found at i:1013 original size:22 final size:21

Alignment explanation


    Indices: 988--1044  Score: 51
    Period size: 22  Copynumber: 2.6  Consensus size: 21

        978 AATACAAATG

                         **       
        988 TTTTGGTTTTTTATTTATATTT
          1 TTTTGGTTTTTTAAATAT-TTT

                * *              
       1010 TTTTAGATTTTTAAATATTTT
          1 TTTTGGTTTTTTAAATATTTT

                 *        
       1031 TTTTGTTATTTTTA
          1 TTTTGGT-TTTTTA

       1045 GCCAAAAATG


Statistics
Matches: 27,  Mismatches: 7, Indels: 2
        0.75            0.19        0.06

Matches are distributed among these distances:
  21    7  0.26
  22   20  0.74

ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74


Consensus pattern (21 bp):   
TTTTGGTTTTTTAAATATTTT

Found at i:2161 original size:12 final size:12

Alignment explanation


    Indices: 2144--2168  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2134 AATTAAAAAA

                        
       2144 TTTAAAATTAAT
          1 TTTAAAATTAAT

                        
       2156 TTTAAAATTAAT
          1 TTTAAAATTAAT

             
       2168 T
          1 T

       2169 AAGTAAATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (12 bp):   
TTTAAAATTAAT
Done.