Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003741.1 Kokia drynarioides strain JFW-HI SEQ_116702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2679
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:1306 original size:17 final size:17

Alignment explanation


    Indices: 1284--1322  Score: 53
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       1274 AAAAAATTCG

                             
       1284 ATTAAAAATTT-AATAA
          1 ATTAAAAATTTAAATAA

                   *          
       1300 TATTAAATATTTAAATAA
          1 -ATTAAAAATTTAAATAA

                 
       1318 ATTAA
          1 ATTAA

       1323 TAACATTAGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  17   15  0.75
  18    5  0.25

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (17 bp):   
ATTAAAAATTTAAATAA

Found at i:1947 original size:20 final size:21

Alignment explanation


    Indices: 1922--1961  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1912 ATCTCTTTGT

                                 
       1922 ATCCAAAAG-AAAAATGTTTA
          1 ATCCAAAAGTAAAAATGTTTA

                          *     
       1942 ATCCAAAAGTAAAACTGTTT
          1 ATCCAAAAGTAAAAATGTTT

       1962 GAATATAATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    9  0.50
  21    9  0.50

ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28


Consensus pattern (21 bp):   
ATCCAAAAGTAAAAATGTTTA

Done.