Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003746.1 Kokia drynarioides strain JFW-HI SEQ_116709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3198
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30


Found at i:1786 original size:14 final size:14

Alignment explanation


    Indices: 1767--1795  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1757 TCATATTGAC

                          
       1767 TTAGTCACATTATG
          1 TTAGTCACATTATG

                          
       1781 TTAGTCACATTATG
          1 TTAGTCACATTATG

             
       1795 T
          1 T

       1796 GGACAAGATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45


Consensus pattern (14 bp):   
TTAGTCACATTATG
Done.