Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003748.1 Kokia drynarioides strain JFW-HI SEQ_116711, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1603
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39


Found at i:527 original size:30 final size:30

Alignment explanation


    Indices: 470--560  Score: 107
    Period size: 29  Copynumber: 3.1  Consensus size: 30

        460 CTTAAGAGGA

                       *                   
        470 CCCTAAACTTTCCAAAAA-T-CTATTTTGAC
          1 CCCTAAACTTTTCAAAAATTAC-ATTTTGAC

                                          
        499 CCCTAAACTTTTCAAAAATTACATTTTGAC
          1 CCCTAAACTTTTCAAAAATTACATTTTGAC

              *    *     *  *             
        529 CCAT-AATTTTTCTAAGATTACATTTTGAC
          1 CCCTAAACTTTTCAAAAATTACATTTTGAC

               
        558 CCC
          1 CCC

        561 AAATTCTTCG


Statistics
Matches: 54,  Mismatches: 6, Indels: 4
        0.84            0.09        0.06

Matches are distributed among these distances:
  29   41  0.76
  30   12  0.22
  31    1  0.02

ACGTcount: A:0.33, C:0.25, G:0.04, T:0.37


Consensus pattern (30 bp):   
CCCTAAACTTTTCAAAAATTACATTTTGAC

Done.