genome.fa.s3750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003750.1 Kokia drynarioides strain JFW-HI SEQ_116713, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167350

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5104--5160	17	3.4	17	78	7	62	22	17	12	47	1.81
15362--15400	21	1.9	21	89	5	62	66	7	12	12	1.43
27048--27072	13	1.9	13	100	0	50	44	0	16	40	1.47
40632--40713	26	3.1	26	86	13	114	82	0	15	1	0.72
41022--41236	112	1.9	112	86	0	304	29	18	11	41	1.85
41687--42056	147	2.5	147	80	2	395	34	15	26	23	1.94
41657--42056	49	8.1	49	78	1	327	35	15	26	23	1.94
42289--42408	50	2.4	50	88	0	186	30	21	19	28	1.97
42480--42856	40	9.4	40	78	6	361	33	27	14	24	1.94
42484--42892	82	5.1	80	78	9	375	33	26	14	25	1.94
42480--42934	40	11.1	40	77	8	258	34	25	14	25	1.94
42871--43009	69	2.0	69	97	0	260	34	17	21	26	1.95
42940--43032	47	2.0	47	85	4	125	36	20	18	24	1.95
42944--43053	47	2.3	46	76	10	114	36	20	19	24	1.95
43300--43335	18	2.0	18	94	0	63	47	11	0	41	1.39
45879--45915	18	2.1	18	89	0	56	27	0	5	67	1.12
45932--45969	20	1.9	20	84	10	51	71	0	5	23	1.07
46348--46471	41	3.0	42	84	7	162	25	19	25	29	1.98
46880--47220	49	7.0	49	78	2	247	21	28	14	34	1.93
46880--47220	98	3.5	97	75	2	308	21	28	14	34	1.93
47669--47883	112	1.9	112	90	1	342	39	13	19	27	1.89
48401--48476	21	3.9	21	72	22	83	38	25	13	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49120--49173	28	1.9	28	100	0	108	25	27	12	33	1.93
51372--51460	24	3.4	25	77	22	101	0	19	0	80	0.70
51370--51462	44	2.1	44	90	7	145	0	18	0	81	0.69
51370--51461	18	5.3	17	83	16	118	0	18	0	81	0.69
57106--57169	31	2.1	31	87	0	92	21	18	21	37	1.94
59889--59936	17	2.8	17	81	6	62	52	12	20	14	1.74
59888--59944	17	3.4	16	76	11	60	50	12	22	14	1.75
66643--66680	19	2.0	19	100	0	76	21	15	31	31	1.94
78036--78071	17	2.2	17	90	5	56	47	0	13	38	1.44
79463--79567	29	3.5	28	76	12	111	27	17	12	42	1.85
79445--79541	32	3.2	31	73	15	94	25	19	12	42	1.86
79445--79567	61	2.0	60	90	1	192	26	17	12	43	1.85
83997--84239	121	2.0	121	100	0	486	32	23	16	27	1.96
88104--88146	2	21.5	2	100	0	86	51	0	0	48	1.00
90541--90644	52	2.0	52	96	0	190	27	15	9	47	1.77
90766--90794	2	14.5	2	100	0	58	51	0	0	48	1.00
91950--91992	18	2.4	18	80	7	52	51	0	2	46	1.13
97611--97666	28	2.0	28	82	6	69	50	0	5	44	1.25
101621--101666	21	2.1	22	84	4	58	47	4	4	43	1.42
112723--112765	3	14.3	3	100	0	86	32	0	0	67	0.91
113655--113685	16	1.9	16	93	0	53	64	3	0	32	1.09
114130--114160	15	2.1	15	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114608--114645	3	12.3	3	94	5	67	65	0	0	34	0.93
115956--115989	15	2.2	16	89	5	52	50	0	11	38	1.39
119409--119440	16	2.0	16	100	0	64	31	6	12	50	1.65
120506--120562	28	2.0	28	89	0	87	28	19	33	19	1.96
121181--121246	30	2.2	30	86	0	87	51	10	4	33	1.57
121840--121929	39	2.3	39	80	3	101	27	30	14	27	1.95
123225--123315	24	3.8	24	97	0	164	24	12	12	51	1.72
125524--125602	26	3.0	25	75	3	77	32	21	29	16	1.95
127239--127306	25	2.7	26	84	9	86	39	27	25	7	1.82
127223--127308	26	3.3	26	79	9	95	37	26	27	8	1.85
129668--129702	18	1.9	18	100	0	70	60	5	11	22	1.52
131679--131763	40	2.1	40	86	0	116	29	15	21	34	1.94
134628--134661	17	1.9	18	88	5	52	70	2	14	11	1.27
135429--135804	187	2.0	187	98	0	734	35	16	11	36	1.86
140702--140906	42	4.9	42	86	1	270	33	27	15	24	1.95
142702--142760	31	2.0	28	84	15	75	33	10	0	55	1.33
143517--143581	6	11.3	6	71	21	50	43	1	1	53	1.19
143517--143578	17	3.6	17	82	6	81	41	1	1	54	1.19
143546--143591	24	2.0	22	87	8	65	45	2	0	52	1.13
145463--145709	30	8.4	30	79	11	214	37	28	2	31	1.69
145526--145733	29	7.1	28	75	16	149	37	28	3	30	1.73
148036--148446	192	2.1	192	85	4	544	46	13	22	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152195--152224	2	15.0	2	92	0	51	46	0	3	50	1.18
153709--153764	25	2.2	25	84	6	69	50	3	19	26	1.64
154688--154725	18	2.2	17	86	9	51	50	0	0	50	1.00
154670--154738	26	2.8	27	83	16	80	50	0	0	49	1.00
156217--156260	2	22.0	2	100	0	88	0	50	0	50	1.00
156260--156292	2	16.5	2	100	0	66	48	0	0	51	1.00
161243--161269	11	2.5	11	100	0	54	25	18	7	48	1.74
163649--163829	43	4.2	42	77	5	157	26	27	18	27	1.98
163650--163828	86	2.1	86	81	9	213	26	27	18	27	1.98
166938--166988	21	2.4	22	83	9	70	39	7	41	11	1.71

Tables:   1

The End!