Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003770.1 Kokia drynarioides strain JFW-HI SEQ_116741, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2127
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28


Found at i:1822 original size:21 final size:21

Alignment explanation


    Indices: 1798--1849  Score: 77
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       1788 AAGATAAGAC

                                 
       1798 TGAAGAAGAAAAGGGCATGCG
          1 TGAAGAAGAAAAGGGCATGCG

                    **      *    
       1819 TGAAGAAGGGAAGGGCGTGCG
          1 TGAAGAAGAAAAGGGCATGCG

                      
       1840 TGAAGAAGAA
          1 TGAAGAAGAA

       1850 CGTAATTTCT


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.40, C:0.08, G:0.42, T:0.10


Consensus pattern (21 bp):   
TGAAGAAGAAAAGGGCATGCG

Done.