Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003771.1 Kokia drynarioides strain JFW-HI SEQ_116745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1283
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31


Found at i:879 original size:52 final size:52

Alignment explanation


    Indices: 798--1043  Score: 386
    Period size: 52  Copynumber: 4.7  Consensus size: 52

        788 TTCACTTCAA

                                *   *                   **  *    
        798 TCATATACTCACGATGACACATAGCCATCGGACCT-TATAATCCGCAAGGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCT-TAATCCATAAAGGAT

                                                                
        850 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCATAAAGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCATAAAGGAT

                      **                 *             *        
        902 TCATATACTCGTGATGACACTTAGTCATCCGACCTCTTAATCCGTAAAGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCATAAAGGAT

                            *                                   
        954 TCATATACTCACGATGTCACTTAGTCATCGGACCTCTTAATCCATAAAGGAT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCATAAAGGAT

                                                  
       1006 TCATATACTCACGATGACACTTAGTCATCGGACCTCTT
          1 TCATATACTCACGATGACACTTAGTCATCGGACCTCTT

       1044 CGTTTATGGC


Statistics
Matches: 178,  Mismatches: 15, Indels: 2
        0.91            0.08        0.01

Matches are distributed among these distances:
  52  177  0.99
  53    1  0.01

ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29


Consensus pattern (52 bp):   
TCATATACTCACGATGACACTTAGTCATCGGACCTCTTAATCCATAAAGGAT

Done.