genome.fa.s3775.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003775.1 Kokia drynarioides strain JFW-HI SEQ_116753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  276273

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2448	162	15.3	162	82	7	2644	44	10	12	32	1.77
2--2685	478	5.6	473	82	7	2773	44	10	12	32	1.76
2--2685	316	8.5	313	81	7	2615	44	10	12	32	1.76
2310--2586	138	2.0	138	84	2	360	43	10	14	30	1.80
4544--6174	248	6.6	247	82	4	1772	28	15	13	43	1.83
4552--6154	489	3.2	491	82	4	1780	28	15	13	43	1.84
8318--8385	24	2.8	24	84	4	84	29	10	8	51	1.66
8327--8395	24	2.9	24	82	4	68	28	10	11	49	1.72
10299--10369	24	3.0	24	85	0	88	28	15	8	47	1.74
10323--10390	24	2.8	24	80	4	66	30	14	7	47	1.72
11886--11919	15	2.2	16	89	5	52	32	2	5	58	1.37
12155--12336	90	2.0	90	98	0	355	26	15	14	42	1.87
15636--15738	23	4.4	23	80	15	106	10	29	22	37	1.88
20771--20810	16	2.5	16	83	0	53	60	0	35	5	1.19
29227--29264	18	2.1	18	90	0	58	57	13	13	15	1.65
41251--41293	22	1.9	23	95	4	79	13	6	13	65	1.46
45132--45216	41	2.1	41	88	0	125	23	11	28	36	1.90
50994--51024	16	1.9	16	93	0	53	22	16	0	61	1.34
53895--54184	151	1.9	151	94	0	517	32	9	18	39	1.83
55577--55607	16	1.9	16	93	0	53	22	16	0	61	1.34
66332--66357	3	8.7	3	100	0	52	65	0	34	0	0.93
77168--77224	26	2.2	26	90	0	87	19	19	31	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79403--79444	21	2.0	21	100	0	84	23	4	28	42	1.74
80545--80582	19	2.0	20	89	5	60	34	28	2	34	1.71
82858--82888	16	1.9	16	93	0	53	22	16	0	61	1.34
82615--83182	282	2.0	285	92	2	955	26	17	18	37	1.93
86650--86737	38	2.3	38	84	5	108	30	23	11	34	1.90
99231--99520	52	5.6	52	89	2	431	37	24	12	25	1.91
101136--101175	21	1.9	21	84	0	53	30	20	17	32	1.95
101947--102078	52	2.5	52	92	0	228	33	26	15	24	1.95
104460--104488	12	2.5	12	94	5	51	6	0	37	55	1.27
127143--127183	20	2.0	20	85	4	55	19	17	12	51	1.76
129134--129320	52	3.6	52	89	0	257	36	23	14	25	1.93
132530--132616	26	3.3	27	80	8	106	24	20	25	29	1.99
140341--140412	21	3.4	21	78	3	74	26	18	23	31	1.97
141421--141494	26	2.8	26	89	0	112	24	21	28	25	1.99
145512--145557	24	1.9	24	90	0	74	50	17	4	28	1.65
148289--148331	20	2.2	20	91	0	68	34	25	9	30	1.87
157067--157121	28	2.0	28	100	0	110	16	14	7	61	1.54
157033--157223	96	2.0	95	94	1	337	23	20	8	46	1.79
157163--157220	27	2.1	28	96	3	109	13	17	6	62	1.52
159500--159562	20	3.1	20	79	9	65	52	6	7	33	1.56
159651--159697	21	2.2	21	85	7	60	48	23	2	25	1.62
161883--161965	36	2.3	36	85	6	107	24	12	16	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164914--164968	9	6.1	9	77	8	58	25	3	0	70	1.03
167229--167277	15	3.4	14	81	16	55	65	2	0	32	1.04
171510--171547	7	5.6	7	81	6	51	57	0	0	42	0.98
175537--175625	46	1.9	46	86	0	124	40	19	8	31	1.82
175572--175686	59	1.9	59	89	0	176	41	17	11	29	1.84
175672--175708	19	1.9	19	88	0	56	45	21	5	27	1.73
176664--176739	32	2.4	32	88	4	109	52	19	2	25	1.59
180527--180573	25	2.0	23	87	8	67	55	4	6	34	1.45
181871--181916	14	3.1	14	82	11	56	52	19	0	28	1.47
185657--185708	20	2.7	18	80	14	59	48	9	11	30	1.72
191106--191463	178	2.0	178	93	1	619	25	14	25	34	1.94
195011--195226	101	2.2	100	81	0	243	23	23	18	35	1.95
195008--195227	50	4.4	50	75	3	190	23	22	17	36	1.95
201335--201367	12	2.8	12	90	0	57	6	33	15	45	1.70
209110--209194	34	2.5	34	88	0	125	24	9	11	54	1.66
212149--212197	25	2.0	25	84	4	64	46	0	10	42	1.37
217485--217561	32	2.4	33	80	4	93	63	6	3	25	1.36
237951--238279	91	3.7	87	74	10	231	41	18	7	31	1.79
238131--238469	93	3.6	93	74	12	325	43	17	9	29	1.80
238124--238481	190	1.9	185	84	6	470	43	18	9	29	1.81
241441--241776	90	3.7	90	79	5	379	38	19	10	32	1.86
241531--241916	88	4.3	85	75	8	234	36	17	10	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242037--242110	30	2.4	31	86	10	100	66	0	5	28	1.14
242037--242115	32	2.6	30	84	11	99	64	1	5	29	1.22
242125--242181	19	2.9	19	80	12	71	63	0	8	28	1.24
243051--243388	168	2.0	168	98	0	658	23	21	19	35	1.96
243451--243507	26	2.2	26	87	0	78	31	15	10	42	1.81
243451--243526	26	2.9	26	80	3	73	30	15	11	42	1.83
246172--246218	24	2.0	24	82	0	58	29	10	19	40	1.85
247611--247672	32	2.0	32	84	6	83	38	14	12	33	1.84
260470--260550	32	2.5	32	100	0	162	53	13	6	27	1.63
260965--261108	71	2.0	71	100	0	288	37	10	16	35	1.83
265629--265653	9	2.8	9	100	0	50	24	0	0	76	0.80
266938--267310	208	1.8	202	88	8	580	38	5	5	50	1.50
270691--270741	17	2.9	17	83	13	68	17	0	9	72	1.11
272826--272875	20	2.5	20	100	0	100	30	16	18	36	1.92

Tables:   1

The End!