Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000378.1 Kokia drynarioides strain JFW-HI SEQ_111169, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4555
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.32

Warning! 93 characters in sequence are not A, C, G, or T


Found at i:3839 original size:19 final size:20

Alignment explanation


    Indices: 3811--3848  Score: 60
    Period size: 19  Copynumber: 1.9  Consensus size: 20

       3801 AATCTAATTC

                 *              
       3811 TTTTATTTTATTT-TTTTAT
          1 TTTTAATTTATTTATTTTAT

                               
       3830 TTTTAATTTATTTATTTTA
          1 TTTTAATTTATTTATTTTA

       3849 AAATAATCCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19   12  0.71
  20    5  0.29

ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79


Consensus pattern (20 bp):   
TTTTAATTTATTTATTTTAT
Done.