Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003789.1 Kokia drynarioides strain JFW-HI SEQ_116770, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3435
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.38


Found at i:77 original size:13 final size:13

Alignment explanation


    Indices: 56--98  Score: 52
    Period size: 13  Copynumber: 3.2  Consensus size: 13

         46 TCTTTTTACA

                         
         56 TTAAAATATTATT
          1 TTAAAATATTATT

                *        
         69 TTAATATATT-TT
          1 TTAAAATATTATT

                           
         81 CATTAAAATATTATT
          1 --TTAAAATATTATT

               
         96 TTA
          1 TTA

         99 TAATTAATGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 6
        0.76            0.06        0.18

Matches are distributed among these distances:
  12    2  0.08
  13   12  0.48
  14    9  0.36
  15    2  0.08

ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56


Consensus pattern (13 bp):   
TTAAAATATTATT
Done.